Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46833 * 2 1 4 4 C 1.53005 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47500 * 304.99999 * 4 3 2 6 6 C 1.52993 * 109.47163 * 65.00452 * 4 3 2 7 7 C 1.53007 * 109.47294 * 185.46180 * 6 4 3 8 8 C 1.50699 * 109.47122 * 185.00397 * 4 3 2 9 9 O 1.21288 * 120.00021 * 275.02979 * 8 4 3 10 10 N 1.34780 * 120.00413 * 95.02140 * 8 4 3 11 11 C 1.46496 * 120.00215 * 175.01479 * 10 8 4 12 12 C 1.53000 * 109.47149 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.74125 * 55.33505 * 12 11 10 14 14 C 1.53501 * 113.46845 * 186.07740 * 12 11 10 15 15 C 1.53684 * 83.27808 * 140.87238 * 14 12 11 16 16 N 1.47059 * 87.98506 * 333.93196 * 15 14 12 17 17 C 1.36932 * 136.06068 * 207.15033 * 16 15 14 18 18 H 1.08003 * 119.99827 * 179.97438 * 17 16 15 19 19 C 1.38804 * 120.00182 * 359.95035 * 17 16 15 20 20 N 1.31624 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00490 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46705 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47344 * 119.99806 * 21 19 17 24 24 H 1.48497 * 109.47340 * 240.00197 * 21 19 17 25 25 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46889 * 299.99691 * 1 2 3 27 27 H 1.08999 * 109.46785 * 59.99911 * 1 2 3 28 28 H 1.09004 * 109.46751 * 240.00282 * 2 1 3 29 29 H 1.08995 * 109.46902 * 120.00583 * 2 1 3 30 30 H 1.09004 * 109.47222 * 60.00570 * 3 2 1 31 31 H 1.08995 * 109.47853 * 300.00001 * 3 2 1 32 32 H 1.09001 * 109.47290 * 305.46492 * 6 4 3 33 33 H 1.09003 * 109.47502 * 65.46446 * 6 4 3 34 34 H 1.08996 * 109.46860 * 174.91659 * 7 6 4 35 35 H 1.08999 * 109.47010 * 294.91842 * 7 6 4 36 36 H 1.08995 * 109.46598 * 54.92094 * 7 6 4 37 37 H 0.96996 * 119.99269 * 355.02352 * 10 8 4 38 38 H 1.08999 * 109.47274 * 60.00593 * 11 10 8 39 39 H 1.09004 * 109.47496 * 300.00307 * 11 10 8 40 40 H 1.08997 * 114.20197 * 254.49152 * 14 12 11 41 41 H 1.08998 * 114.20407 * 27.31656 * 14 12 11 42 42 H 1.09002 * 113.47329 * 219.14957 * 15 14 12 43 43 H 1.08998 * 113.46363 * 88.71619 * 15 14 12 44 44 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 5.6044 0.7074 -1.2497 8 6 4.0723 2.8579 0.1246 9 8 4.1880 3.5492 -0.8653 10 7 4.3927 3.3557 1.3354 11 6 4.9834 4.6919 1.4451 12 6 5.2498 5.0124 2.9172 13 1 5.8698 4.2611 3.4065 14 6 5.7325 6.4505 3.1520 15 6 4.8263 6.3605 4.3900 16 7 4.0339 5.3506 3.6723 17 6 2.7354 4.9167 3.6961 18 1 2.4174 4.1278 3.0305 19 6 1.8279 5.4904 4.5758 20 7 2.2154 6.4519 5.3870 21 14 0.0563 4.8990 4.6078 22 1 -0.1227 3.8178 3.6058 23 1 -0.2675 4.3784 5.9603 24 1 -0.8492 6.0303 4.2831 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.6396 -0.1546 -1.4434 33 1 3.7997 1.4751 -2.1411 34 1 5.9599 0.1913 -2.1415 35 1 6.0493 1.7014 -1.2036 36 1 5.8895 0.1402 -0.3637 37 1 4.2324 2.8292 2.1340 38 1 4.2948 5.4286 1.0314 39 1 5.9220 4.7208 0.8916 40 1 6.7952 6.5335 3.3800 41 1 5.3935 7.1639 2.4009 42 1 4.2765 7.2795 4.5933 43 1 5.3334 5.9683 5.2715 44 1 1.5812 6.8530 6.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754497672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -31.786153 kcal Electronic energy + Delta-G solvation = -21413.736549 eV Core-core repulsion = 18366.061702 eV Total energy + Delta-G solvation = -3047.674847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10774 -39.84731 -37.20376 -35.47598 -34.23951 -33.89717 -30.54183 -29.92455 -28.91914 -25.50279 -25.40394 -24.01273 -23.05941 -21.93942 -21.19505 -20.59063 -18.76163 -17.96645 -17.10881 -17.05487 -16.31996 -16.03199 -15.82955 -15.61786 -15.08444 -14.94707 -14.45089 -14.37908 -14.06214 -13.73384 -13.54503 -13.30745 -13.00121 -12.95246 -12.71591 -12.60638 -12.59049 -12.32189 -12.25005 -12.00121 -11.85965 -11.69724 -11.68283 -11.62522 -11.30739 -11.15757 -10.87361 -10.54733 -9.97189 -8.89605 -7.88187 -5.19690 1.42236 1.43739 1.52330 1.69065 2.29703 2.46937 3.34236 3.42893 3.66601 3.78123 3.90906 3.95383 4.14256 4.22705 4.29404 4.33687 4.35620 4.49225 4.57706 4.63736 4.68756 4.72021 4.81864 4.87393 4.89537 4.95575 5.04263 5.04722 5.09486 5.15474 5.24738 5.31130 5.32715 5.34516 5.39745 5.47019 5.52566 5.59621 5.74090 5.96652 6.62540 6.93602 7.30779 7.63707 8.63558 9.29746 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.006516 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.908661 B = 4295.872781 C = 5978.910659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.099 4.099 5 H 0.109 0.891 6 C -0.105 4.105 7 C -0.151 4.151 8 C 0.512 3.488 9 O -0.589 6.589 10 N -0.714 5.714 11 C 0.130 3.870 12 C 0.134 3.866 13 H 0.071 0.929 14 C -0.136 4.136 15 C 0.143 3.857 16 N -0.629 5.629 17 C -0.204 4.204 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.954 5.954 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.299 1.299 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.407 0.593 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.024 0.976 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.125 -13.992 -9.896 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.147 4.147 4 C -0.120 4.120 5 H 0.127 0.873 6 C -0.142 4.142 7 C -0.209 4.209 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.364 5.364 11 C 0.005 3.995 12 C 0.028 3.972 13 H 0.088 0.912 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.355 5.355 17 C -0.332 4.332 18 H 0.104 0.896 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.227 1.227 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.242 0.758 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.891 -13.525 -10.492 17.802 hybrid contribution -1.266 0.259 0.944 1.601 sum 3.624 -13.265 -9.548 16.741 Atomic orbital electron populations 1.21802 0.95883 1.02291 1.01387 1.21546 0.95845 0.94461 1.03420 1.21533 0.92348 0.99186 1.01664 1.21455 0.97112 0.91352 1.02099 0.87299 1.21470 0.96434 1.01459 0.94854 1.21786 0.95380 1.00857 1.02852 1.21280 0.76087 0.90255 0.82382 1.90624 1.55661 1.62277 1.38421 1.46071 1.63113 1.18361 1.08860 1.21550 0.97199 0.83547 0.97210 1.22557 0.87901 0.96630 0.90147 0.91208 1.23515 0.99899 0.95702 0.98311 1.22077 0.89977 0.92915 0.93320 1.45988 1.03809 1.42749 1.42974 1.19232 0.83738 1.14788 1.15463 0.89574 1.25521 1.01694 0.99906 0.99297 1.70015 1.34448 1.29380 1.26596 0.85185 0.80605 0.77441 0.77291 1.18778 1.21936 1.22708 0.91131 0.93885 0.92971 0.89948 0.90787 0.93196 0.92605 0.88341 0.92809 0.91198 0.95112 0.91433 0.75792 0.94544 0.90559 0.88135 0.90489 0.94678 0.95833 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.12 -2.05 5.70 30.59 0.17 -1.88 16 3 C -0.11 -2.65 4.66 30.59 0.14 -2.51 16 4 C -0.10 -2.36 2.18 -11.54 -0.03 -2.39 16 5 H 0.11 2.12 8.13 -2.39 -0.02 2.10 16 6 C -0.10 -2.17 5.04 30.59 0.15 -2.02 16 7 C -0.15 -2.98 9.65 71.98 0.69 -2.29 16 8 C 0.51 16.78 5.96 87.66 0.52 17.31 16 9 O -0.59 -23.73 15.99 -3.05 -0.05 -23.78 16 10 N -0.71 -23.56 5.40 -463.05 -2.50 -26.06 16 11 C 0.13 4.63 5.53 86.38 0.48 5.11 16 12 C 0.13 4.93 4.10 41.79 0.17 5.10 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.14 -4.70 8.04 30.99 0.25 -4.45 16 15 C 0.14 6.56 7.40 83.24 0.62 7.18 16 16 N -0.63 -30.51 3.65 -713.14 -2.60 -33.11 16 17 C -0.20 -10.94 10.55 84.03 0.89 -10.05 16 18 H 0.09 4.40 7.68 -2.91 -0.02 4.38 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.95 -57.71 11.51 21.65 0.25 -57.46 16 21 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.19 6.45 -2.38 -0.02 1.18 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.49 6.33 -2.39 -0.02 1.47 16 33 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.76 7.42 -2.39 -0.02 0.74 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.41 12.58 8.47 -92.71 -0.79 11.79 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 42 H 0.03 1.85 7.12 -2.39 -0.02 1.84 16 43 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -69.18 353.19 2.53 -66.65 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.17 Total: 22.54 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.24 Total: 3.37 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -4.86 Total: -116.63 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.18 2.53 -66.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754497672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.867 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds