Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.53006 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47433 * 305.00955 * 4 3 2 6 6 C 1.53005 * 109.46609 * 65.00379 * 4 3 2 7 7 C 1.52992 * 109.47086 * 185.00306 * 4 3 2 8 8 C 1.50710 * 109.46835 * 175.00422 * 7 4 3 9 9 O 1.21277 * 119.99869 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99597 * 179.97438 * 8 7 4 11 11 C 1.46502 * 120.00008 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99954 * 179.97438 * 10 8 7 13 13 C 1.53944 * 113.74636 * 218.74724 * 12 10 8 14 14 N 1.47816 * 86.03679 * 222.08525 * 13 12 10 15 15 C 1.36939 * 134.45977 * 204.64500 * 14 13 12 16 16 H 1.07989 * 120.00386 * 173.34278 * 15 14 13 17 17 C 1.38810 * 119.99309 * 353.34602 * 15 14 13 18 18 N 1.31616 * 120.00623 * 5.05851 * 17 15 14 19 19 Si 1.86798 * 119.99582 * 185.06431 * 17 15 14 20 20 H 1.48506 * 109.47228 * 94.98518 * 19 17 15 21 21 H 1.48503 * 109.47312 * 214.98364 * 19 17 15 22 22 H 1.48502 * 109.47300 * 334.98823 * 19 17 15 23 23 C 1.47580 * 91.04925 * 24.54512 * 14 13 12 24 24 H 1.09003 * 109.47429 * 59.99747 * 1 2 3 25 25 H 1.08998 * 109.47388 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47377 * 299.99693 * 1 2 3 27 27 H 1.09002 * 109.46852 * 240.00326 * 2 1 3 28 28 H 1.08998 * 109.47001 * 120.00413 * 2 1 3 29 29 H 1.09002 * 109.47079 * 60.00465 * 3 2 1 30 30 H 1.08998 * 109.47608 * 300.00041 * 3 2 1 31 31 H 1.09006 * 109.46871 * 180.02562 * 6 4 3 32 32 H 1.09002 * 109.47328 * 299.99728 * 6 4 3 33 33 H 1.08997 * 109.47395 * 59.99884 * 6 4 3 34 34 H 1.08997 * 109.47304 * 294.99917 * 7 4 3 35 35 H 1.08998 * 109.47419 * 55.00261 * 7 4 3 36 36 H 1.08994 * 109.47550 * 89.99959 * 11 10 8 37 37 H 1.09003 * 109.46293 * 209.99774 * 11 10 8 38 38 H 1.08996 * 109.46930 * 329.99137 * 11 10 8 39 39 H 1.09008 * 112.94081 * 350.33697 * 12 10 8 40 40 H 1.09001 * 113.76607 * 336.34502 * 13 12 10 41 41 H 1.08998 * 113.77064 * 107.74793 * 13 12 10 42 42 H 0.96993 * 120.00522 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.77244 * 221.15037 * 23 14 13 44 44 H 1.09004 * 113.76851 * 89.75760 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8795 0.1264 8 6 5.5818 2.8705 0.2505 9 8 6.1848 1.8183 0.2398 10 7 6.2548 4.0317 0.3733 11 6 5.5262 5.3027 0.3867 12 6 7.7147 4.0230 0.4944 13 6 8.2607 5.0661 1.4863 14 7 9.3099 5.3252 0.4777 15 6 10.5851 5.8217 0.5262 16 1 11.2014 5.8147 -0.3606 17 6 11.0856 6.3340 1.7153 18 7 10.3730 6.2522 2.8188 19 14 12.7707 7.1395 1.7492 20 1 12.6204 8.6085 1.5915 21 1 13.4337 6.8460 3.0452 22 1 13.5976 6.6045 0.6377 23 6 8.4325 4.8316 -0.6014 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.1705 0.8323 -1.3059 32 1 3.7172 -0.1910 -1.3961 33 1 3.7174 1.4221 -2.1485 34 1 3.7919 3.4461 -0.7591 35 1 3.6450 3.3432 1.0118 36 1 5.2611 5.5587 1.4124 37 1 6.1565 6.0871 -0.0323 38 1 4.6192 5.2078 -0.2102 39 1 8.1230 3.0229 0.6404 40 1 7.5904 5.9100 1.6495 41 1 8.6380 4.6352 2.4136 42 1 10.7229 6.6098 3.6497 43 1 8.9465 4.2139 -1.3378 44 1 7.8127 5.6065 -1.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754572232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -1.393910 kcal Electronic energy + Delta-G solvation = -20884.159483 eV Core-core repulsion = 17837.802543 eV Total energy + Delta-G solvation = -3046.356941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95304 -37.96346 -36.55705 -34.40993 -32.79218 -31.95739 -28.47929 -27.28722 -26.68280 -26.49152 -24.81460 -23.33516 -21.99159 -20.33888 -19.38952 -18.38177 -17.00684 -16.64904 -16.03111 -15.52105 -15.36147 -14.80364 -14.31253 -14.13323 -13.75710 -13.63611 -13.26265 -13.02728 -12.46915 -12.41662 -12.22779 -11.93543 -11.89250 -11.67337 -11.58685 -11.47616 -11.30985 -11.06250 -10.87881 -10.77078 -10.71027 -10.62366 -10.52635 -10.22754 -10.04878 -9.56671 -9.27565 -8.80971 -8.09139 -6.90945 -5.81334 -3.13271 2.94246 3.33072 3.39074 3.44417 3.45796 4.44635 4.56070 4.69345 4.74798 4.99067 5.01963 5.12133 5.20452 5.28928 5.38932 5.43623 5.47536 5.52596 5.56796 5.59062 5.65192 5.74254 5.77214 5.84169 5.86514 5.89570 6.01891 6.04698 6.10038 6.15605 6.21755 6.38227 6.44543 6.51080 6.59541 6.83129 7.18650 7.34390 7.51568 7.82900 7.93649 8.53882 9.00896 9.66942 10.55186 11.36508 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056242 B = 0.003184 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.730849 B = 8791.115613 C = 8894.074033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.136 4.136 8 C 0.509 3.491 9 O -0.544 6.544 10 N -0.602 5.602 11 C 0.078 3.922 12 C 0.090 3.910 13 C 0.160 3.840 14 N -0.607 5.607 15 C -0.224 4.224 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.108 3.892 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.033 0.967 41 H 0.071 0.929 42 H 0.255 0.745 43 H 0.046 0.954 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.069 -6.926 -5.714 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.210 4.210 7 C -0.176 4.176 8 C 0.297 3.703 9 O -0.422 6.422 10 N -0.335 5.335 11 C -0.066 4.066 12 C -0.014 4.014 13 C 0.034 3.966 14 N -0.333 5.333 15 C -0.351 4.351 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.019 4.019 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.442 -7.326 -5.560 20.608 hybrid contribution 0.824 0.847 0.104 1.186 sum -17.618 -6.479 -5.456 19.548 Atomic orbital electron populations 1.21783 0.96176 1.01383 1.01639 1.21575 0.95414 0.97118 1.02291 1.21682 0.94924 0.96814 1.01821 1.20908 0.94158 0.94588 0.99864 0.90441 1.21988 1.03340 0.99889 0.95811 1.21792 0.92847 0.99231 1.03715 1.20671 0.89866 0.83581 0.76139 1.90633 1.70430 1.30644 1.50523 1.48076 1.07881 1.05994 1.71509 1.21768 0.96577 0.86531 1.01682 1.24004 0.76464 1.01523 0.99413 1.22599 0.87721 0.92228 0.94095 1.45703 1.10108 1.75129 1.02409 1.19001 0.86857 1.32898 0.96355 0.90027 1.24839 0.98847 1.01004 0.95631 1.69831 1.37742 1.50097 0.98872 0.86093 0.83207 0.79357 0.77091 1.21582 1.21640 1.20478 1.22969 0.91525 0.94489 0.92942 0.92894 0.92987 0.92866 0.91714 0.92034 0.92076 0.92059 0.90541 0.92986 0.93616 0.89263 0.89230 0.92543 0.90454 0.91655 0.86761 0.94902 0.91029 0.93544 0.93613 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.13 -1.02 5.69 -26.73 -0.15 -1.17 16 3 C -0.11 -0.96 4.68 -26.73 -0.13 -1.09 16 4 C -0.08 -0.82 2.04 -90.62 -0.18 -1.01 16 5 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 6 C -0.15 -1.75 8.69 37.16 0.32 -1.43 16 7 C -0.14 -1.49 3.73 -27.88 -0.10 -1.60 16 8 C 0.51 7.98 7.39 -10.98 -0.08 7.90 16 9 O -0.54 -10.40 13.44 5.56 0.07 -10.33 16 10 N -0.60 -9.77 3.09 -175.74 -0.54 -10.31 16 11 C 0.08 0.99 8.83 59.85 0.53 1.52 16 12 C 0.09 1.81 4.40 -70.15 -0.31 1.50 16 13 C 0.16 3.78 6.88 -2.84 -0.02 3.76 16 14 N -0.61 -15.78 3.70 -177.88 -0.66 -16.44 16 15 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -27.33 11.51 55.49 0.64 -26.69 16 19 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.11 2.28 8.46 -2.97 -0.03 2.25 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 32 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.83 7.40 -51.93 -0.38 0.45 16 35 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.07 6.35 -51.93 -0.33 0.74 16 38 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 39 H 0.11 2.52 7.22 -51.92 -0.37 2.15 16 40 H 0.03 0.77 6.83 -51.93 -0.35 0.41 16 41 H 0.07 1.90 7.37 -51.93 -0.38 1.52 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -32.02 342.53 -8.08 -40.10 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.69 Total: -1.85 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.04 Total: 3.18 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.56 Total: -53.44 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.02 -8.08 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754572232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds