Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.53006 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47433 * 305.00955 * 4 3 2 6 6 C 1.53005 * 109.46609 * 65.00379 * 4 3 2 7 7 C 1.52992 * 109.47086 * 185.00306 * 4 3 2 8 8 C 1.50710 * 109.46835 * 175.00422 * 7 4 3 9 9 O 1.21277 * 119.99869 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99597 * 179.97438 * 8 7 4 11 11 C 1.46502 * 120.00008 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99954 * 179.97438 * 10 8 7 13 13 C 1.53944 * 113.74636 * 218.74724 * 12 10 8 14 14 N 1.47816 * 86.03679 * 222.08525 * 13 12 10 15 15 C 1.36939 * 134.45977 * 204.64500 * 14 13 12 16 16 H 1.07989 * 120.00386 * 173.34278 * 15 14 13 17 17 C 1.38810 * 119.99309 * 353.34602 * 15 14 13 18 18 N 1.31616 * 120.00623 * 5.05851 * 17 15 14 19 19 Si 1.86798 * 119.99582 * 185.06431 * 17 15 14 20 20 H 1.48506 * 109.47228 * 94.98518 * 19 17 15 21 21 H 1.48503 * 109.47312 * 214.98364 * 19 17 15 22 22 H 1.48502 * 109.47300 * 334.98823 * 19 17 15 23 23 C 1.47580 * 91.04925 * 24.54512 * 14 13 12 24 24 H 1.09003 * 109.47429 * 59.99747 * 1 2 3 25 25 H 1.08998 * 109.47388 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47377 * 299.99693 * 1 2 3 27 27 H 1.09002 * 109.46852 * 240.00326 * 2 1 3 28 28 H 1.08998 * 109.47001 * 120.00413 * 2 1 3 29 29 H 1.09002 * 109.47079 * 60.00465 * 3 2 1 30 30 H 1.08998 * 109.47608 * 300.00041 * 3 2 1 31 31 H 1.09006 * 109.46871 * 180.02562 * 6 4 3 32 32 H 1.09002 * 109.47328 * 299.99728 * 6 4 3 33 33 H 1.08997 * 109.47395 * 59.99884 * 6 4 3 34 34 H 1.08997 * 109.47304 * 294.99917 * 7 4 3 35 35 H 1.08998 * 109.47419 * 55.00261 * 7 4 3 36 36 H 1.08994 * 109.47550 * 89.99959 * 11 10 8 37 37 H 1.09003 * 109.46293 * 209.99774 * 11 10 8 38 38 H 1.08996 * 109.46930 * 329.99137 * 11 10 8 39 39 H 1.09008 * 112.94081 * 350.33697 * 12 10 8 40 40 H 1.09001 * 113.76607 * 336.34502 * 13 12 10 41 41 H 1.08998 * 113.77064 * 107.74793 * 13 12 10 42 42 H 0.96993 * 120.00522 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.77244 * 221.15037 * 23 14 13 44 44 H 1.09004 * 113.76851 * 89.75760 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8795 0.1264 8 6 5.5818 2.8705 0.2505 9 8 6.1848 1.8183 0.2398 10 7 6.2548 4.0317 0.3733 11 6 5.5262 5.3027 0.3867 12 6 7.7147 4.0230 0.4944 13 6 8.2607 5.0661 1.4863 14 7 9.3099 5.3252 0.4777 15 6 10.5851 5.8217 0.5262 16 1 11.2014 5.8147 -0.3606 17 6 11.0856 6.3340 1.7153 18 7 10.3730 6.2522 2.8188 19 14 12.7707 7.1395 1.7492 20 1 12.6204 8.6085 1.5915 21 1 13.4337 6.8460 3.0452 22 1 13.5976 6.6045 0.6377 23 6 8.4325 4.8316 -0.6014 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.1705 0.8323 -1.3059 32 1 3.7172 -0.1910 -1.3961 33 1 3.7174 1.4221 -2.1485 34 1 3.7919 3.4461 -0.7591 35 1 3.6450 3.3432 1.0118 36 1 5.2611 5.5587 1.4124 37 1 6.1565 6.0871 -0.0323 38 1 4.6192 5.2078 -0.2102 39 1 8.1230 3.0229 0.6404 40 1 7.5904 5.9100 1.6495 41 1 8.6380 4.6352 2.4136 42 1 10.7229 6.6098 3.6497 43 1 8.9465 4.2139 -1.3378 44 1 7.8127 5.6065 -1.0527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754572232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = -20.528639 kcal Electronic energy + Delta-G solvation = -20884.989228 eV Core-core repulsion = 17837.802543 eV Total energy + Delta-G solvation = -3047.186685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29618 -39.49858 -37.49856 -35.87324 -34.08492 -33.44168 -30.00191 -28.60888 -27.78824 -27.40020 -26.64426 -25.00984 -22.95580 -21.40753 -20.66383 -19.76066 -18.84496 -18.08625 -17.33876 -16.82446 -16.69376 -16.14045 -15.78717 -15.33216 -14.98249 -14.61136 -14.46374 -14.15550 -13.85955 -13.59588 -13.38127 -13.21309 -13.20506 -13.01229 -12.83717 -12.75356 -12.58131 -12.50859 -12.28298 -12.06864 -11.96513 -11.76066 -11.60239 -11.54236 -11.40120 -11.21525 -10.89673 -10.54798 -9.49643 -8.97300 -7.96446 -5.30159 1.44520 1.46480 1.55787 1.71817 2.05634 2.47673 3.22294 3.39721 3.64016 3.83869 3.85621 4.02598 4.19055 4.29826 4.32227 4.37522 4.43306 4.50443 4.63957 4.65756 4.72747 4.79234 4.81170 4.85400 4.86286 4.98030 5.00349 5.03356 5.11252 5.17028 5.23425 5.24565 5.30310 5.37021 5.44137 5.48556 5.60162 5.64197 5.72623 5.86444 6.56416 6.86262 7.29172 7.54418 8.49074 9.21415 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.056242 B = 0.003184 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.730849 B = 8791.115613 C = 8894.074033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.075 4.075 5 H 0.052 0.948 6 C -0.150 4.150 7 C -0.126 4.126 8 C 0.503 3.497 9 O -0.586 6.586 10 N -0.604 5.604 11 C 0.073 3.927 12 C 0.114 3.886 13 C 0.165 3.835 14 N -0.638 5.638 15 C -0.238 4.238 16 H 0.085 0.915 17 C -0.065 4.065 18 N -0.952 5.952 19 Si 0.982 3.018 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.267 1.267 23 C 0.115 3.885 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.251 0.749 43 H 0.048 0.952 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.174 -6.062 -6.992 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.071 0.929 6 C -0.208 4.208 7 C -0.165 4.165 8 C 0.294 3.706 9 O -0.466 6.466 10 N -0.337 5.337 11 C -0.069 4.069 12 C 0.009 3.991 13 C 0.038 3.962 14 N -0.365 5.365 15 C -0.366 4.366 16 H 0.103 0.897 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.810 3.190 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.192 1.192 23 C -0.011 4.011 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.592 -6.460 -6.871 22.649 hybrid contribution 1.432 0.503 0.472 1.589 sum -19.160 -5.957 -6.399 21.060 Atomic orbital electron populations 1.21761 0.95097 1.01769 1.02129 1.21585 0.96347 0.96985 1.01733 1.21617 0.92590 0.97163 1.03010 1.20890 0.95980 0.94112 0.98426 0.92905 1.21936 1.01018 1.00856 0.96943 1.21856 0.88545 0.99953 1.06141 1.21599 0.91854 0.82464 0.74720 1.90630 1.71703 1.32181 1.52106 1.48088 1.06072 1.07909 1.71584 1.22018 0.97506 0.84273 1.03071 1.23221 0.79531 0.98961 0.97402 1.22457 0.87564 0.93205 0.92926 1.46028 1.10355 1.75377 1.04765 1.19390 0.88281 1.32403 0.96552 0.89678 1.25706 1.02829 1.01992 0.95303 1.70014 1.39533 1.51256 0.99203 0.85013 0.78785 0.78267 0.76976 1.21022 1.22068 1.19192 1.23060 0.90880 0.94795 0.92341 0.92229 0.92759 0.92504 0.92071 0.92943 0.91040 0.90593 0.94006 0.92416 0.92017 0.86280 0.86784 0.91788 0.91592 0.87274 0.89309 0.94307 0.94979 0.94053 0.93365 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.13 -1.82 5.69 30.59 0.17 -1.65 16 3 C -0.11 -1.45 4.68 30.60 0.14 -1.31 16 4 C -0.08 -1.47 2.04 -10.79 -0.02 -1.50 16 5 H 0.05 1.30 7.95 -2.39 -0.02 1.28 16 6 C -0.15 -3.26 8.69 71.98 0.63 -2.63 16 7 C -0.13 -2.35 3.73 29.85 0.11 -2.24 16 8 C 0.50 15.17 7.39 87.66 0.65 15.82 16 9 O -0.59 -22.80 13.44 -3.02 -0.04 -22.84 16 10 N -0.60 -18.83 3.09 -828.31 -2.56 -21.39 16 11 C 0.07 1.64 8.83 127.77 1.13 2.77 16 12 C 0.11 4.67 4.40 46.75 0.21 4.88 16 13 C 0.16 8.00 6.88 86.44 0.59 8.60 16 14 N -0.64 -33.67 3.70 -716.68 -2.65 -36.33 16 15 C -0.24 -13.64 10.70 84.03 0.90 -12.75 16 16 H 0.09 4.66 7.83 -2.92 -0.02 4.64 16 17 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 18 N -0.95 -58.08 11.51 21.65 0.25 -57.83 16 19 Si 0.98 46.10 29.56 68.60 2.03 48.12 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.12 4.82 8.46 86.48 0.73 5.55 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.90 6.57 -2.39 -0.02 0.88 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.21 5.95 -2.38 -0.01 1.19 16 32 H 0.06 1.14 6.57 -2.39 -0.02 1.13 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 1.60 7.40 -2.39 -0.02 1.58 16 35 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.66 6.35 -2.39 -0.02 1.65 16 38 H 0.11 1.51 6.44 -2.39 -0.02 1.49 16 39 H 0.09 4.10 7.22 -2.38 -0.02 4.08 16 40 H 0.04 1.83 6.83 -2.39 -0.02 1.81 16 41 H 0.03 1.79 7.37 -2.39 -0.02 1.77 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 2.24 6.84 -2.39 -0.02 2.22 16 Total: -1.00 -71.99 342.53 4.39 -67.60 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.95 Total: 11.41 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.42 Total: 11.25 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.96 Total: -115.55 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.04 Total: -22.84 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -71.99 4.39 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754572232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.070 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds