Wall clock time and date at job start Mon Mar 30 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.08998 * 109.47440 * 306.77287 * 3 2 1 5 5 C 1.50701 * 109.47115 * 186.77651 * 3 2 1 6 6 H 1.08006 * 119.99714 * 239.99872 * 5 3 2 7 7 C 1.37867 * 120.00353 * 60.00039 * 5 3 2 8 8 N 1.31518 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00402 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46877 * 90.00123 * 9 7 5 11 11 H 1.48503 * 109.47143 * 209.99780 * 9 7 5 12 12 H 1.48495 * 109.46727 * 330.00225 * 9 7 5 13 13 N 1.46901 * 109.47143 * 66.77265 * 3 2 1 14 14 C 1.46896 * 111.00585 * 255.53672 * 13 3 2 15 15 H 1.08999 * 109.46664 * 42.02752 * 14 13 3 16 16 C 1.52995 * 109.47132 * 282.03320 * 14 13 3 17 17 C 1.52990 * 109.47403 * 162.02869 * 14 13 3 18 18 C 1.53004 * 109.46994 * 270.42473 * 17 14 13 19 19 H 1.08991 * 109.13140 * 309.35880 * 18 17 14 20 20 C 1.52927 * 109.30266 * 189.87424 * 18 17 14 21 21 C 1.53336 * 108.67572 * 188.93427 * 20 18 17 22 22 C 1.53066 * 108.43582 * 67.52378 * 21 20 18 23 23 C 1.50179 * 109.88806 * 311.10593 * 22 21 20 24 24 O 1.21283 * 118.24329 * 197.86922 * 23 22 21 25 25 N 1.33350 * 123.51290 * 17.59080 * 23 22 21 26 26 H 1.09003 * 109.47011 * 299.00758 * 1 2 3 27 27 H 1.08997 * 109.47537 * 59.00933 * 1 2 3 28 28 H 1.08997 * 109.47136 * 179.01043 * 1 2 3 29 29 H 1.08997 * 109.47484 * 240.00517 * 2 1 3 30 30 H 1.08999 * 109.47195 * 120.00002 * 2 1 3 31 31 H 0.97004 * 119.99951 * 180.02562 * 8 7 5 32 32 H 1.00906 * 110.99811 * 19.49433 * 13 3 2 33 33 H 1.08999 * 109.46882 * 299.99299 * 16 14 13 34 34 H 1.09001 * 109.47738 * 59.99308 * 16 14 13 35 35 H 1.09004 * 109.47078 * 179.97438 * 16 14 13 36 36 H 1.08992 * 109.47311 * 150.42923 * 17 14 13 37 37 H 1.08995 * 109.47172 * 30.42163 * 17 14 13 38 38 H 1.08999 * 109.60299 * 308.69461 * 20 18 17 39 39 H 1.09005 * 109.59700 * 69.01727 * 20 18 17 40 40 H 1.09001 * 109.67267 * 187.26352 * 21 20 18 41 41 H 1.08999 * 109.68148 * 307.76475 * 21 20 18 42 42 H 1.09003 * 109.39891 * 190.98238 * 22 21 20 43 43 H 1.08995 * 109.40765 * 71.23559 * 22 21 20 44 44 H 0.96991 * 117.95081 * 177.77169 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5810 1.9902 -0.8231 5 6 3.5376 1.4459 -0.1677 6 1 4.1653 1.8826 0.5951 7 6 4.1064 0.8916 -1.2946 8 7 3.3419 0.3604 -2.2236 9 14 5.9628 0.8964 -1.5027 10 1 6.5305 -0.3413 -0.9102 11 1 6.2987 0.9524 -2.9482 12 1 6.5348 2.0818 -0.8152 13 7 1.6881 2.0863 1.2727 14 6 0.5616 3.0132 1.1003 15 1 -0.1867 2.5586 0.4511 16 6 1.0630 4.3132 0.4684 17 6 -0.0625 3.3165 2.4638 18 6 -1.1594 2.2922 2.7617 19 1 -1.8348 2.2337 1.9083 20 6 -1.9435 2.7362 3.9973 21 6 -2.8848 1.6004 4.4158 22 6 -2.0368 0.4284 4.9160 23 6 -0.9444 0.1306 3.9295 24 8 -0.3933 -0.9480 3.9916 25 7 -0.5515 0.9865 2.9854 26 1 -0.3633 0.4984 0.8988 27 1 -0.3634 0.5291 -0.8809 28 1 -0.3633 -1.0275 -0.0177 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7421 -0.0300 -3.0163 32 1 1.4848 1.3980 1.9820 33 1 1.8113 4.7677 1.1176 34 1 1.5078 4.0971 -0.5030 35 1 0.2270 5.0008 0.3400 36 1 -0.4938 4.3174 2.4514 37 1 0.7054 3.2612 3.2353 38 1 -1.2514 2.9559 4.8102 39 1 -2.5246 3.6276 3.7608 40 1 -3.5427 1.9443 5.2140 41 1 -3.4809 1.2835 3.5600 42 1 -2.6689 -0.4519 5.0329 43 1 -1.5951 0.6858 5.8786 44 1 0.1848 0.7236 2.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:39 Heat of formation + Delta-G solvation = -49.302767 kcal Electronic energy + Delta-G solvation = -22204.864899 eV Core-core repulsion = 19156.430475 eV Total energy + Delta-G solvation = -3048.434425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45075 -37.81499 -36.28981 -33.89907 -32.82557 -31.72260 -30.30208 -28.76627 -26.76512 -26.22270 -23.49434 -22.55472 -22.29399 -20.11872 -19.74284 -18.99344 -17.42071 -16.31081 -16.07804 -15.41400 -15.23592 -14.69336 -14.24343 -14.09691 -13.82216 -13.67606 -13.40263 -12.97311 -12.83026 -12.44459 -12.15020 -11.73613 -11.62846 -11.43081 -11.35604 -11.19511 -11.18504 -11.14088 -10.82399 -10.74715 -10.64611 -10.31673 -9.99070 -9.74913 -9.68968 -9.51446 -9.04414 -8.92053 -8.29660 -7.24566 -5.94417 -3.97427 2.76860 3.35639 3.36690 3.41953 3.46332 4.44569 4.46388 4.48823 4.58693 4.70790 5.05160 5.13915 5.21183 5.23353 5.34931 5.45604 5.51592 5.57197 5.66720 5.68670 5.81826 5.86173 5.98379 6.07672 6.13044 6.14824 6.22658 6.32011 6.37591 6.59370 6.77194 6.85784 6.89553 7.02588 7.20166 7.39104 7.50011 7.76231 7.93329 8.30434 8.34378 8.52131 8.61135 9.10153 9.67444 11.11462 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.005374 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.791447 B = 5209.395485 C = 5731.330783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.150 4.150 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.077 3.923 15 H 0.036 0.964 16 C -0.135 4.135 17 C -0.137 4.137 18 C 0.134 3.866 19 H 0.074 0.926 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.135 4.135 23 C 0.514 3.486 24 O -0.558 6.558 25 N -0.715 5.715 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.315 0.685 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 6.383 10.743 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.033 4.033 15 H 0.054 0.946 16 C -0.193 4.193 17 C -0.175 4.175 18 C 0.029 3.971 19 H 0.092 0.908 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.175 4.175 23 C 0.300 3.700 24 O -0.437 6.437 25 N -0.376 5.376 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.942 6.296 10.670 17.916 hybrid contribution 0.504 -0.763 -0.615 1.102 sum -12.437 5.533 10.055 16.923 Atomic orbital electron populations 1.22109 0.99659 0.99879 0.99933 1.22266 0.91457 1.01944 1.03304 1.19270 0.95774 0.88784 0.85262 0.95017 1.21230 0.91328 1.36207 1.04062 0.91921 1.24958 0.98021 0.95666 0.95982 1.69869 1.34530 1.39957 1.09439 0.86538 0.85815 0.78361 0.76912 1.20864 1.21487 1.19952 1.61076 1.36719 1.21982 1.11444 1.21639 0.92442 0.95282 0.93937 0.94578 1.21769 0.99994 0.95666 1.01846 1.22274 0.97695 0.98347 0.99176 1.21190 0.95077 0.82880 0.97908 0.90821 1.21938 0.98553 0.98699 0.97686 1.21658 0.97815 0.94861 1.01782 1.21647 0.96501 1.00619 0.98746 1.20195 0.84290 0.83873 0.81618 1.90777 1.56873 1.23469 1.72590 1.46348 1.38121 1.17658 1.35449 0.94217 0.93599 0.94435 0.87843 0.94603 0.93130 0.86458 0.92401 0.91858 0.93895 0.90016 0.90133 0.90713 0.89812 0.90615 0.91133 0.88444 0.88409 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.77 37.16 0.33 -2.85 16 2 C -0.15 -3.59 5.03 -26.73 -0.13 -3.72 16 3 C 0.22 5.28 1.84 -68.86 -0.13 5.15 16 4 H 0.03 0.84 6.78 -51.93 -0.35 0.49 16 5 C -0.49 -13.48 8.84 -34.44 -0.30 -13.79 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.49 5.28 -17.82 -0.09 1.40 16 8 N -0.90 -25.58 11.29 55.43 0.63 -24.96 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.82 5.78 -100.96 -0.58 -14.40 16 14 C 0.08 1.27 1.75 -67.72 -0.12 1.15 16 15 H 0.04 0.62 6.00 -51.93 -0.31 0.31 16 16 C -0.13 -2.19 9.15 37.16 0.34 -1.85 16 17 C -0.14 -1.70 4.60 -26.73 -0.12 -1.82 16 18 C 0.13 1.53 2.72 -68.36 -0.19 1.35 16 19 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 20 C -0.13 -1.07 5.28 -26.59 -0.14 -1.21 16 21 C -0.12 -0.95 6.03 -26.52 -0.16 -1.11 16 22 C -0.14 -1.37 6.03 -28.10 -0.17 -1.54 16 23 C 0.51 7.78 7.71 -11.87 -0.09 7.69 16 24 O -0.56 -11.09 17.78 5.56 0.10 -11.00 16 25 N -0.72 -10.48 4.07 -54.85 -0.22 -10.70 16 26 H 0.04 0.71 3.13 -51.93 -0.16 0.55 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.79 5.92 -51.93 -0.31 2.48 16 30 H 0.04 0.87 8.01 -51.93 -0.42 0.45 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.31 6.30 4.81 -39.29 -0.19 6.11 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.20 7.26 -51.93 -0.38 0.82 16 35 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 36 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 37 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.40 7.01 3.11 -40.82 -0.13 6.88 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.87 329.01 -8.37 -39.24 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.24 Total: 11.31 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.98 Total: -11.15 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.18 Total: -50.06 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.10 Total: -11.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.87 -8.37 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.061 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds