Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 H 1.08998 * 109.47440 * 306.77287 * 3 2 1 5 5 C 1.50701 * 109.47115 * 186.77651 * 3 2 1 6 6 H 1.08006 * 119.99714 * 239.99872 * 5 3 2 7 7 C 1.37867 * 120.00353 * 60.00039 * 5 3 2 8 8 N 1.31518 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00402 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46877 * 90.00123 * 9 7 5 11 11 H 1.48503 * 109.47143 * 209.99780 * 9 7 5 12 12 H 1.48495 * 109.46727 * 330.00225 * 9 7 5 13 13 N 1.46901 * 109.47143 * 66.77265 * 3 2 1 14 14 C 1.46896 * 111.00585 * 255.53672 * 13 3 2 15 15 H 1.08999 * 109.46664 * 42.02752 * 14 13 3 16 16 C 1.52995 * 109.47132 * 282.03320 * 14 13 3 17 17 C 1.52990 * 109.47403 * 162.02869 * 14 13 3 18 18 C 1.53004 * 109.46994 * 270.42473 * 17 14 13 19 19 H 1.08991 * 109.13140 * 309.35880 * 18 17 14 20 20 C 1.52927 * 109.30266 * 189.87424 * 18 17 14 21 21 C 1.53336 * 108.67572 * 188.93427 * 20 18 17 22 22 C 1.53066 * 108.43582 * 67.52378 * 21 20 18 23 23 C 1.50179 * 109.88806 * 311.10593 * 22 21 20 24 24 O 1.21283 * 118.24329 * 197.86922 * 23 22 21 25 25 N 1.33350 * 123.51290 * 17.59080 * 23 22 21 26 26 H 1.09003 * 109.47011 * 299.00758 * 1 2 3 27 27 H 1.08997 * 109.47537 * 59.00933 * 1 2 3 28 28 H 1.08997 * 109.47136 * 179.01043 * 1 2 3 29 29 H 1.08997 * 109.47484 * 240.00517 * 2 1 3 30 30 H 1.08999 * 109.47195 * 120.00002 * 2 1 3 31 31 H 0.97004 * 119.99951 * 180.02562 * 8 7 5 32 32 H 1.00906 * 110.99811 * 19.49433 * 13 3 2 33 33 H 1.08999 * 109.46882 * 299.99299 * 16 14 13 34 34 H 1.09001 * 109.47738 * 59.99308 * 16 14 13 35 35 H 1.09004 * 109.47078 * 179.97438 * 16 14 13 36 36 H 1.08992 * 109.47311 * 150.42923 * 17 14 13 37 37 H 1.08995 * 109.47172 * 30.42163 * 17 14 13 38 38 H 1.08999 * 109.60299 * 308.69461 * 20 18 17 39 39 H 1.09005 * 109.59700 * 69.01727 * 20 18 17 40 40 H 1.09001 * 109.67267 * 187.26352 * 21 20 18 41 41 H 1.08999 * 109.68148 * 307.76475 * 21 20 18 42 42 H 1.09003 * 109.39891 * 190.98238 * 22 21 20 43 43 H 1.08995 * 109.40765 * 71.23559 * 22 21 20 44 44 H 0.96991 * 117.95081 * 177.77169 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5810 1.9902 -0.8231 5 6 3.5376 1.4459 -0.1677 6 1 4.1653 1.8826 0.5951 7 6 4.1064 0.8916 -1.2946 8 7 3.3419 0.3604 -2.2236 9 14 5.9628 0.8964 -1.5027 10 1 6.5305 -0.3413 -0.9102 11 1 6.2987 0.9524 -2.9482 12 1 6.5348 2.0818 -0.8152 13 7 1.6881 2.0863 1.2727 14 6 0.5616 3.0132 1.1003 15 1 -0.1867 2.5586 0.4511 16 6 1.0630 4.3132 0.4684 17 6 -0.0625 3.3165 2.4638 18 6 -1.1594 2.2922 2.7617 19 1 -1.8348 2.2337 1.9083 20 6 -1.9435 2.7362 3.9973 21 6 -2.8848 1.6004 4.4158 22 6 -2.0368 0.4284 4.9160 23 6 -0.9444 0.1306 3.9295 24 8 -0.3933 -0.9480 3.9916 25 7 -0.5515 0.9865 2.9854 26 1 -0.3633 0.4984 0.8988 27 1 -0.3634 0.5291 -0.8809 28 1 -0.3633 -1.0275 -0.0177 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7421 -0.0300 -3.0163 32 1 1.4848 1.3980 1.9820 33 1 1.8113 4.7677 1.1176 34 1 1.5078 4.0971 -0.5030 35 1 0.2270 5.0008 0.3400 36 1 -0.4938 4.3174 2.4514 37 1 0.7054 3.2612 3.2353 38 1 -1.2514 2.9559 4.8102 39 1 -2.5246 3.6276 3.7608 40 1 -3.5427 1.9443 5.2140 41 1 -3.4809 1.2835 3.5600 42 1 -2.6689 -0.4519 5.0329 43 1 -1.5951 0.6858 5.8786 44 1 0.1848 0.7236 2.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602610130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -70.193808 kcal Electronic energy + Delta-G solvation = -22205.770803 eV Core-core repulsion = 19156.430475 eV Total energy + Delta-G solvation = -3049.340328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53499 -39.24824 -37.57818 -35.43473 -33.83825 -33.64129 -31.56311 -30.25493 -28.31388 -27.55518 -25.00118 -23.87497 -23.29739 -21.62241 -21.40152 -19.92302 -18.54890 -18.34972 -17.23585 -16.74779 -16.58137 -16.39651 -15.46348 -15.34627 -15.08259 -14.77723 -14.71299 -14.49196 -14.23358 -13.59357 -13.53232 -13.25803 -13.12855 -12.93427 -12.72769 -12.64333 -12.54336 -12.36690 -12.07746 -11.97272 -11.88357 -11.80176 -11.71991 -11.68131 -11.30396 -11.01606 -10.65265 -10.44058 -10.07985 -8.95099 -8.07610 -6.18422 1.40100 1.41250 1.51622 1.63268 2.29400 2.43824 3.18218 3.54589 3.64696 3.75666 3.80630 3.98176 4.17210 4.22810 4.31898 4.39216 4.41377 4.53805 4.56055 4.57035 4.70412 4.86861 4.91407 4.94522 4.95853 5.02088 5.06837 5.10540 5.13107 5.16948 5.21139 5.39040 5.43285 5.49249 5.54028 5.70224 5.72929 5.84165 6.33095 6.42369 6.67848 6.81451 6.94418 7.19437 7.50616 8.95907 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.005374 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.791447 B = 5209.395485 C = 5731.330783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.510 4.510 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.683 5.683 14 C 0.072 3.928 15 H 0.030 0.970 16 C -0.131 4.131 17 C -0.125 4.125 18 C 0.128 3.872 19 H 0.080 0.920 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.129 4.129 23 C 0.504 3.496 24 O -0.619 6.619 25 N -0.721 5.721 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.259 0.741 32 H 0.317 0.683 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 8.279 12.354 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.119 3.881 4 H 0.024 0.976 5 C -0.549 4.549 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.318 5.318 14 C -0.038 4.038 15 H 0.048 0.952 16 C -0.188 4.188 17 C -0.163 4.163 18 C 0.024 3.976 19 H 0.098 0.902 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.169 4.169 23 C 0.293 3.707 24 O -0.502 6.502 25 N -0.377 5.377 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.891 8.243 12.292 20.995 hybrid contribution 1.104 -1.321 -1.129 2.059 sum -13.787 6.922 11.164 19.043 Atomic orbital electron populations 1.21974 0.96728 1.00648 1.01064 1.22069 0.94097 1.01172 1.00876 1.18936 0.94021 0.88826 0.86316 0.97577 1.21549 0.93154 1.36270 1.03946 0.93183 1.25677 1.02123 0.95365 0.95775 1.69994 1.36046 1.40373 1.09708 0.85602 0.80944 0.78322 0.76999 1.20636 1.20842 1.19520 1.60957 1.39334 1.22016 1.09487 1.21806 0.91125 0.94170 0.96680 0.95216 1.21750 1.01228 0.96306 0.99562 1.22204 0.97699 1.00615 0.95784 1.21481 0.94888 0.80952 1.00253 0.90227 1.21969 0.98511 0.99871 0.95854 1.21677 0.97511 0.93416 1.02801 1.21708 0.95165 1.02247 0.97737 1.21196 0.84707 0.82886 0.81868 1.90742 1.59164 1.26039 1.74233 1.46580 1.37409 1.18950 1.34777 0.91974 0.93570 0.93801 0.91117 0.95992 0.93150 0.86268 0.92598 0.95698 0.90025 0.86318 0.91018 0.90320 0.86706 0.87395 0.91157 0.87858 0.86762 0.77184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 8.77 71.98 0.63 -5.36 16 2 C -0.14 -7.10 5.03 30.59 0.15 -6.95 16 3 C 0.23 11.52 1.84 44.17 0.08 11.60 16 4 H 0.01 0.35 6.78 -2.39 -0.02 0.34 16 5 C -0.51 -29.12 8.84 25.60 0.23 -28.89 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.48 5.28 84.65 0.45 0.93 16 8 N -0.92 -54.10 11.29 21.44 0.24 -53.86 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.68 -28.41 5.78 -473.34 -2.73 -31.14 16 14 C 0.07 2.30 1.75 44.91 0.08 2.38 16 15 H 0.03 1.00 6.00 -2.39 -0.01 0.99 16 16 C -0.13 -4.11 9.15 71.98 0.66 -3.45 16 17 C -0.12 -2.75 4.60 30.59 0.14 -2.61 16 18 C 0.13 2.54 2.72 45.11 0.12 2.66 16 19 H 0.08 1.53 7.87 -2.39 -0.02 1.51 16 20 C -0.12 -1.45 5.28 30.68 0.16 -1.29 16 21 C -0.12 -1.28 6.03 30.73 0.19 -1.10 16 22 C -0.13 -2.27 6.03 29.71 0.18 -2.09 16 23 C 0.50 14.92 7.71 87.72 0.68 15.60 16 24 O -0.62 -25.18 17.78 -3.04 -0.05 -25.23 16 25 N -0.72 -20.41 4.07 -446.62 -1.82 -22.23 16 26 H 0.06 2.24 3.13 -2.39 -0.01 2.23 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 4.00 5.92 -2.39 -0.01 3.98 16 30 H 0.02 1.11 8.01 -2.39 -0.02 1.09 16 31 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 32 H 0.32 12.96 4.81 -89.69 -0.43 12.53 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.02 0.95 7.26 -2.39 -0.02 0.93 16 35 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.12 1.79 7.79 -2.39 -0.02 1.77 16 37 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 38 H 0.08 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.39 13.46 3.11 -92.71 -0.29 13.17 16 Total: -1.00 -71.55 329.01 1.67 -69.88 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.27 Total: 33.64 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.74 Total: -18.55 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.31 Total: -107.23 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.55 1.67 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.317 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds