Wall clock time and date at job start Mon Mar 30 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 N 1.46906 * 109.46811 * 179.97438 * 16 14 13 18 18 C 1.46893 * 111.00170 * 293.95499 * 17 16 14 19 19 C 1.46899 * 110.99606 * 170.00218 * 17 16 14 20 20 C 1.54262 * 110.03553 * 297.90714 * 19 17 16 21 21 C 1.54963 * 104.16240 * 217.13950 * 20 19 17 22 22 C 1.54889 * 102.77855 * 37.88961 * 21 20 19 23 23 C 1.53877 * 110.02858 * 180.69181 * 19 17 16 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 31 31 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 32 32 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 33 33 H 1.09005 * 109.47110 * 60.00079 * 18 17 16 34 34 H 1.08997 * 109.47368 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47421 * 300.00388 * 18 17 16 36 36 H 1.08998 * 110.01632 * 59.30269 * 19 17 16 37 37 H 1.09004 * 110.48839 * 335.78743 * 20 19 17 38 38 H 1.09000 * 110.48523 * 98.43033 * 20 19 17 39 39 H 1.09002 * 110.72017 * 279.57262 * 21 20 19 40 40 H 1.09008 * 110.92268 * 156.29811 * 21 20 19 41 41 H 1.08998 * 110.48691 * 203.40740 * 22 21 20 42 42 H 1.08997 * 110.59830 * 80.81737 * 22 21 20 43 43 H 1.09003 * 110.02871 * 238.56562 * 23 19 17 44 44 H 1.08994 * 110.03383 * 359.95371 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 7 -1.3258 3.8725 2.5262 18 6 -1.3747 4.9561 1.5357 19 6 -1.8388 4.3244 3.8265 20 6 -1.9195 3.1347 4.8052 21 6 -3.2092 3.4021 5.6215 22 6 -4.1738 3.9825 4.5577 23 6 -3.2714 4.8636 3.6694 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0607 -2.9502 30 1 2.2720 2.1231 1.9978 31 1 0.0673 2.6131 3.4684 32 1 0.7277 4.1530 2.8678 33 1 -1.0555 4.5759 0.5652 34 1 -2.3942 5.3342 1.4607 35 1 -0.7104 5.7626 1.8463 36 1 -1.1905 5.1000 4.2342 37 1 -2.0023 2.1955 4.2581 38 1 -1.0485 3.1200 5.4604 39 1 -3.0219 4.1298 6.4112 40 1 -3.6054 2.4759 6.0379 41 1 -4.9473 4.5859 5.0328 42 1 -4.6230 3.1820 3.9699 43 1 -3.3185 5.9007 4.0018 44 1 -3.5856 4.7908 2.6283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180630296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:43 Heat of formation + Delta-G solvation = -44.022009 kcal Electronic energy + Delta-G solvation = -21473.106352 eV Core-core repulsion = 18424.900918 eV Total energy + Delta-G solvation = -3048.205434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55873 -38.31960 -35.40741 -34.42951 -32.33553 -30.96609 -29.39555 -28.21905 -27.44873 -26.45576 -23.75057 -22.74636 -20.77624 -20.09864 -19.42336 -19.21993 -17.08284 -16.56781 -15.89178 -15.38589 -15.10033 -14.93062 -14.38923 -14.15395 -13.77173 -13.40838 -13.34172 -12.70200 -12.62547 -12.19963 -11.86066 -11.64324 -11.40330 -11.24971 -11.20881 -11.15044 -11.00658 -10.91307 -10.87255 -10.82050 -10.72598 -10.60214 -10.27799 -10.10765 -9.55930 -9.01946 -8.84185 -8.46250 -8.10179 -7.71061 -6.09791 -4.19257 3.26230 3.31704 3.32597 3.51267 3.76848 4.30260 4.43767 4.53972 4.58751 4.87046 5.21084 5.25262 5.33313 5.40328 5.40623 5.48778 5.56642 5.59757 5.69256 5.73036 5.78143 5.81826 5.87524 5.97121 6.06873 6.11315 6.27598 6.43581 6.46306 6.54068 6.73849 7.09393 7.11899 7.26924 7.29836 7.43861 7.53986 7.66078 7.79865 7.95241 8.22739 8.74616 8.82945 9.24582 9.48827 10.95341 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.003946 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.099633 B = 7094.528421 C = 7215.243442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.532 6.532 16 C 0.032 3.968 17 N -0.514 5.514 18 C 0.016 3.984 19 C 0.079 3.921 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.121 4.121 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.097 0.903 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.015 0.985 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 6.915 13.719 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.361 5.361 14 C 0.286 3.714 15 O -0.409 6.409 16 C -0.099 4.099 17 N -0.238 5.238 18 C -0.132 4.132 19 C -0.030 4.030 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.159 4.159 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.115 0.885 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.513 6.411 12.650 17.654 hybrid contribution 1.951 0.641 0.592 2.137 sum -8.561 7.052 13.242 17.274 Atomic orbital electron populations 1.21829 0.98186 0.97914 1.01410 1.21927 0.92720 0.99836 1.02095 1.18730 0.93970 0.89152 0.81066 0.93442 1.21214 0.90860 1.39011 1.06227 0.92247 1.24882 0.98499 0.94852 0.95421 1.69889 1.35154 1.37582 1.09310 0.86536 0.85011 0.78261 0.77434 1.20189 1.21145 1.20249 1.46484 1.14660 1.56520 1.18478 1.20183 0.82583 0.79670 0.88955 1.90626 1.50949 1.59020 1.40307 1.22065 0.90180 0.99669 0.98034 1.61827 1.20677 1.34177 1.07099 1.22619 1.00927 0.91655 0.97955 1.22341 0.95688 0.95699 0.89256 1.22496 0.97484 0.99092 0.96770 1.22460 0.95589 1.00579 0.97427 1.22302 0.97387 0.99200 0.96915 1.22273 0.93918 0.98385 1.01277 0.93976 0.93249 0.96066 0.88457 0.95182 0.92546 0.78226 0.88603 0.92871 0.88797 0.91534 0.96696 0.94351 0.90093 0.91980 0.91849 0.91573 0.92084 0.91333 0.92157 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.16 0.32 -2.78 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -14.63 5.02 -54.93 -0.28 -14.91 16 14 C 0.50 9.81 6.12 -10.99 -0.07 9.74 16 15 O -0.53 -12.18 11.45 5.56 0.06 -12.11 16 16 C 0.03 0.47 5.31 -4.97 -0.03 0.45 16 17 N -0.51 -7.48 4.28 -234.98 -1.01 -8.49 16 18 C 0.02 0.23 8.90 60.06 0.53 0.77 16 19 C 0.08 0.91 2.67 -66.60 -0.18 0.74 16 20 C -0.12 -1.27 5.10 -25.03 -0.13 -1.40 16 21 C -0.12 -1.09 6.91 -24.70 -0.17 -1.26 16 22 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 23 C -0.12 -1.25 5.90 -25.61 -0.15 -1.40 16 24 H 0.04 0.94 5.64 -51.93 -0.29 0.65 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 31 H 0.10 1.26 6.79 -51.93 -0.35 0.91 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.09 1.67 5.88 -51.93 -0.31 1.36 16 34 H 0.07 0.85 6.01 -51.93 -0.31 0.54 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.91 6.15 -51.93 -0.32 0.59 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -29.32 334.77 -8.95 -38.26 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.64 Total: 6.48 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.74 Total: -5.71 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.66 Total: -47.55 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.06 Total: -12.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.32 -8.95 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180630296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds