Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 N 1.46906 * 109.46811 * 179.97438 * 16 14 13 18 18 C 1.46893 * 111.00170 * 293.95499 * 17 16 14 19 19 C 1.46899 * 110.99606 * 170.00218 * 17 16 14 20 20 C 1.54262 * 110.03553 * 297.90714 * 19 17 16 21 21 C 1.54963 * 104.16240 * 217.13950 * 20 19 17 22 22 C 1.54889 * 102.77855 * 37.88961 * 21 20 19 23 23 C 1.53877 * 110.02858 * 180.69181 * 19 17 16 24 24 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 31 31 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 32 32 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 33 33 H 1.09005 * 109.47110 * 60.00079 * 18 17 16 34 34 H 1.08997 * 109.47368 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47421 * 300.00388 * 18 17 16 36 36 H 1.08998 * 110.01632 * 59.30269 * 19 17 16 37 37 H 1.09004 * 110.48839 * 335.78743 * 20 19 17 38 38 H 1.09000 * 110.48523 * 98.43033 * 20 19 17 39 39 H 1.09002 * 110.72017 * 279.57262 * 21 20 19 40 40 H 1.09008 * 110.92268 * 156.29811 * 21 20 19 41 41 H 1.08998 * 110.48691 * 203.40740 * 22 21 20 42 42 H 1.08997 * 110.59830 * 80.81737 * 22 21 20 43 43 H 1.09003 * 110.02871 * 238.56562 * 23 19 17 44 44 H 1.08994 * 110.03383 * 359.95371 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 7 -1.3258 3.8725 2.5262 18 6 -1.3747 4.9561 1.5357 19 6 -1.8388 4.3244 3.8265 20 6 -1.9195 3.1347 4.8052 21 6 -3.2092 3.4021 5.6215 22 6 -4.1738 3.9825 4.5577 23 6 -3.2714 4.8636 3.6694 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0607 -2.9502 30 1 2.2720 2.1231 1.9978 31 1 0.0673 2.6131 3.4684 32 1 0.7277 4.1530 2.8678 33 1 -1.0555 4.5759 0.5652 34 1 -2.3942 5.3342 1.4607 35 1 -0.7104 5.7626 1.8463 36 1 -1.1905 5.1000 4.2342 37 1 -2.0023 2.1955 4.2581 38 1 -1.0485 3.1200 5.4604 39 1 -3.0219 4.1298 6.4112 40 1 -3.6054 2.4759 6.0379 41 1 -4.9473 4.5859 5.0328 42 1 -4.6230 3.1820 3.9699 43 1 -3.3185 5.9007 4.0018 44 1 -3.5856 4.7908 2.6283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180630296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = -62.960614 kcal Electronic energy + Delta-G solvation = -21473.927591 eV Core-core repulsion = 18424.900918 eV Total energy + Delta-G solvation = -3049.026673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92267 -39.52729 -37.01175 -35.72950 -34.25583 -32.83286 -30.42489 -29.41751 -28.68430 -27.95473 -25.23001 -24.39730 -22.02963 -21.39235 -20.96155 -20.34994 -18.83595 -17.71890 -17.29328 -17.10968 -16.46270 -16.12816 -15.97969 -15.55308 -14.99676 -14.70775 -14.51131 -14.19083 -14.14058 -13.70302 -13.48774 -13.14348 -12.94444 -12.83755 -12.72277 -12.60458 -12.29161 -12.14863 -12.01988 -11.92107 -11.81294 -11.69759 -11.67978 -11.53595 -11.34857 -11.03519 -10.55159 -10.39172 -9.55454 -9.17810 -8.14359 -6.31906 1.45029 1.46769 1.54545 1.96251 2.34255 2.54769 3.13315 3.17367 3.67663 3.78919 4.03578 4.13739 4.30073 4.38576 4.46105 4.51451 4.52650 4.58739 4.60554 4.64398 4.71425 4.80135 4.85586 4.88625 5.00842 5.09636 5.10039 5.14932 5.24587 5.27879 5.29260 5.38867 5.47422 5.54519 5.58690 5.68148 5.82785 5.93441 6.06143 6.20241 6.27779 6.77021 7.10161 7.36091 7.70464 8.90594 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.003946 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.099633 B = 7094.528421 C = 7215.243442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.710 5.710 14 C 0.497 3.503 15 O -0.569 6.569 16 C 0.045 3.955 17 N -0.532 5.532 18 C 0.022 3.978 19 C 0.077 3.923 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.121 4.121 24 H 0.045 0.955 25 H 0.023 0.977 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 7.605 16.457 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.449 6.449 16 C -0.086 4.086 17 N -0.257 5.257 18 C -0.126 4.126 19 C -0.030 4.030 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.158 4.158 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.236 0.764 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.070 7.116 15.437 19.757 hybrid contribution 1.740 0.457 -0.276 1.820 sum -8.330 7.573 15.161 18.884 Atomic orbital electron populations 1.21646 0.96947 0.98874 1.00264 1.21774 0.93695 0.99311 1.01092 1.18289 0.93408 0.89044 0.81498 0.98662 1.21575 0.91583 1.38900 1.06662 0.91100 1.25772 1.03255 0.94414 0.95052 1.70050 1.37101 1.38371 1.09831 0.85444 0.79205 0.78410 0.77537 1.18892 1.21268 1.19703 1.46256 1.15686 1.56606 1.17483 1.21055 0.81533 0.78833 0.90236 1.90623 1.51928 1.60141 1.42173 1.21959 0.90977 1.00382 0.95296 1.61788 1.20486 1.34670 1.08756 1.22475 1.01948 0.91824 0.96328 1.22470 0.96302 0.96474 0.87783 1.22504 0.99097 0.97569 0.96733 1.22454 0.94386 1.01311 0.97339 1.22306 0.97733 0.98903 0.96830 1.22286 0.93371 0.99538 1.00647 0.93594 0.95820 0.93917 0.91233 0.94163 0.92663 0.76403 0.86334 0.90815 0.92617 0.90155 0.95512 0.93268 0.92097 0.90579 0.90291 0.90959 0.90404 0.92618 0.90550 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.50 2.24 44.24 0.10 14.60 16 4 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -29.12 8.73 25.60 0.22 -28.90 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.82 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.71 -29.12 5.02 -446.10 -2.24 -31.36 16 14 C 0.50 19.46 6.12 87.66 0.54 19.99 16 15 O -0.57 -26.99 11.45 -3.03 -0.03 -27.03 16 16 C 0.04 1.26 5.31 85.56 0.45 1.71 16 17 N -0.53 -14.87 4.28 -897.35 -3.84 -18.71 16 18 C 0.02 0.64 8.90 127.69 1.14 1.77 16 19 C 0.08 1.61 2.67 45.64 0.12 1.73 16 20 C -0.12 -2.24 5.10 31.69 0.16 -2.08 16 21 C -0.12 -1.73 6.91 31.91 0.22 -1.51 16 22 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 23 C -0.12 -2.25 5.90 31.32 0.18 -2.06 16 24 H 0.05 2.06 5.64 -2.39 -0.01 2.05 16 25 H 0.02 1.17 7.85 -2.39 -0.02 1.16 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 3.90 5.95 -2.39 -0.01 3.88 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.40 13.85 8.54 -92.70 -0.79 13.06 16 31 H 0.12 2.81 6.79 -2.39 -0.02 2.79 16 32 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 33 H 0.06 2.04 5.88 -2.38 -0.01 2.03 16 34 H 0.08 2.03 6.01 -2.39 -0.01 2.02 16 35 H 0.03 0.68 8.14 -2.38 -0.02 0.67 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.38 7.92 -2.39 -0.02 1.37 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.38 6.15 -2.39 -0.01 1.37 16 Total: -1.00 -65.28 334.77 0.91 -64.37 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.18 Total: 27.09 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.58 Total: -5.98 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -5.84 Total: -102.63 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.03 Total: -27.03 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -65.28 0.91 -64.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180630296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.410 kcal (2) G-P(sol) polarization free energy of solvation -65.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds