Wall clock time and date at job start Mon Mar 30 2020 00:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.50699 * 109.47390 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99541 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00061 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99645 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47538 * 35.00237 * 7 6 4 9 9 C 1.53001 * 109.47383 * 274.99607 * 7 6 4 10 10 C 1.53005 * 109.46507 * 155.00043 * 7 6 4 11 11 H 1.08994 * 109.50160 * 305.05898 * 10 7 6 12 12 C 1.53046 * 109.49151 * 184.99658 * 10 7 6 13 13 C 1.53045 * 109.52442 * 178.65388 * 12 10 7 14 14 C 1.53171 * 109.32375 * 61.37513 * 13 12 10 15 15 N 1.46926 * 108.76737 * 305.35440 * 14 13 12 16 16 C 1.36941 * 120.62963 * 233.58780 * 15 14 13 17 17 H 1.07994 * 119.99972 * 151.84875 * 16 15 14 18 18 C 1.38815 * 119.99858 * 331.84727 * 16 15 14 19 19 N 1.31614 * 120.00095 * 343.06725 * 18 16 15 20 20 Si 1.86794 * 119.99885 * 163.06326 * 18 16 15 21 21 H 1.48509 * 109.47251 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47263 * 120.00209 * 20 18 16 23 23 H 1.48500 * 109.47387 * 240.00602 * 20 18 16 24 24 C 1.46921 * 118.73936 * 53.61360 * 15 14 13 25 25 H 1.09002 * 109.47021 * 299.99679 * 1 2 3 26 26 H 1.09002 * 109.47317 * 59.99895 * 1 2 3 27 27 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47021 * 240.00321 * 2 1 3 29 29 H 1.08994 * 109.47382 * 120.00427 * 2 1 3 30 30 H 1.09002 * 109.46862 * 60.00224 * 3 2 1 31 31 H 1.09002 * 109.47062 * 300.00261 * 3 2 1 32 32 H 0.96999 * 119.99836 * 0.02562 * 6 4 3 33 33 H 1.08990 * 109.47329 * 180.02562 * 9 7 6 34 34 H 1.09005 * 109.47010 * 300.00694 * 9 7 6 35 35 H 1.09004 * 109.47045 * 59.99905 * 9 7 6 36 36 H 1.08996 * 109.46609 * 298.66732 * 12 10 7 37 37 H 1.08997 * 109.46181 * 58.64736 * 12 10 7 38 38 H 1.08996 * 109.49917 * 181.31053 * 13 12 10 39 39 H 1.08996 * 109.50068 * 301.41569 * 13 12 10 40 40 H 1.08998 * 109.58722 * 185.56994 * 14 13 12 41 41 H 1.09001 * 109.59287 * 65.13989 * 14 13 12 42 42 H 0.97003 * 120.00125 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.58737 * 186.60337 * 24 15 14 44 44 H 1.08997 * 109.59143 * 66.17515 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6097 -0.0003 8 1 6.0492 1.7682 -0.5900 9 6 6.1959 2.4835 1.4367 10 6 6.1957 3.9173 -0.6095 11 1 5.7605 4.0515 -1.5997 12 6 7.7210 3.8665 -0.7245 13 6 8.2291 5.1605 -1.3646 14 6 7.8509 6.3486 -0.4750 15 7 6.4007 6.3207 -0.2403 16 6 5.6291 7.4196 -0.5092 17 1 4.5904 7.2973 -0.7779 18 6 6.1823 8.6907 -0.4363 19 7 7.3197 8.8780 0.1988 20 14 5.3124 10.1352 -1.2399 21 1 4.0608 9.6629 -1.8849 22 1 4.9839 11.1515 -0.2081 23 1 6.2003 10.7399 -2.2651 24 6 5.7943 5.0915 0.2889 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7358 3.4498 0.0009 33 1 7.2858 2.4839 1.4367 34 1 5.8326 3.3252 2.0264 35 1 5.8326 1.5520 1.8707 36 1 8.1567 3.7573 0.2686 37 1 8.0104 3.0173 -1.3434 38 1 9.3132 5.1142 -1.4677 39 1 7.7746 5.2829 -2.3477 40 1 8.1226 7.2792 -0.9732 41 1 8.3766 6.2743 0.4770 42 1 7.7064 9.7662 0.2494 43 1 4.7090 5.1927 0.2947 44 1 6.1523 4.9147 1.3031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566958676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:57 Heat of formation + Delta-G solvation = -45.337551 kcal Electronic energy + Delta-G solvation = -21358.431475 eV Core-core repulsion = 18310.168995 eV Total energy + Delta-G solvation = -3048.262480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.89944 -38.07657 -35.28535 -34.36549 -33.01213 -31.10326 -30.46567 -28.34614 -27.65017 -25.31885 -23.93823 -22.33058 -21.87399 -20.48716 -19.99175 -18.59963 -17.13024 -16.54432 -15.95047 -15.69507 -14.91233 -14.56471 -14.23436 -14.02239 -13.82131 -13.47610 -13.16463 -13.09512 -12.64573 -12.39912 -12.29122 -12.07637 -11.85783 -11.76131 -11.60653 -11.31711 -11.01108 -10.93297 -10.87701 -10.56653 -10.46355 -10.18174 -10.12372 -9.89570 -9.76004 -9.52847 -9.39847 -8.85856 -8.48675 -6.67929 -5.81342 -3.24231 2.76242 3.33803 3.34467 3.42572 3.44136 4.45971 4.72343 4.79260 4.86919 5.06860 5.23349 5.31976 5.35235 5.40014 5.44374 5.49802 5.57410 5.60643 5.69803 5.73260 5.85053 5.88685 6.00855 6.03845 6.15240 6.17330 6.23601 6.26261 6.36473 6.51324 6.58602 6.67503 6.71560 6.79993 6.86990 6.98515 7.39092 7.65707 7.67978 7.76557 8.36659 8.42378 9.18622 9.82283 10.39196 11.26801 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.004532 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.162540 B = 6176.923456 C = 7184.962277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.510 3.490 5 O -0.550 6.550 6 N -0.722 5.722 7 C 0.149 3.851 8 H 0.080 0.920 9 C -0.164 4.164 10 C -0.113 4.113 11 H 0.071 0.929 12 C -0.101 4.101 13 C -0.142 4.142 14 C 0.170 3.830 15 N -0.592 5.592 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.152 3.848 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.047 0.953 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -13.027 -0.379 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.183 4.183 4 C 0.297 3.703 5 O -0.428 6.428 6 N -0.374 5.374 7 C 0.044 3.956 8 H 0.098 0.902 9 C -0.222 4.222 10 C -0.133 4.133 11 H 0.089 0.911 12 C -0.139 4.139 13 C -0.182 4.182 14 C 0.044 3.956 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.025 3.975 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.825 -13.595 -0.350 15.216 hybrid contribution -0.574 1.321 -0.389 1.492 sum -7.399 -12.274 -0.739 14.350 Atomic orbital electron populations 1.21801 0.95654 1.01774 1.01814 1.21258 0.95063 0.94879 1.03406 1.21739 0.92202 0.99967 1.04427 1.20730 0.90206 0.83766 0.75612 1.90670 1.70623 1.31422 1.50107 1.46253 1.07777 1.08630 1.74692 1.21009 0.78836 0.98823 0.96938 0.90211 1.22251 1.01558 1.01787 0.96620 1.21950 0.96693 0.94142 1.00553 0.91064 1.21422 0.94314 0.97653 1.00481 1.22177 0.98714 0.96913 1.00353 1.20783 0.83645 0.95750 0.95409 1.44034 1.03802 1.09587 1.73960 1.19199 0.94727 0.84276 1.40137 0.91764 1.25037 0.97904 0.97465 0.99154 1.70044 1.20453 1.21434 1.42594 0.86254 0.79011 0.82710 0.78963 1.20282 1.21732 1.21557 1.20992 0.96177 0.86317 0.94016 0.92684 0.92690 0.92566 0.91371 0.91365 0.88960 0.88981 0.76282 0.91522 0.91637 0.92994 0.92263 0.93581 0.93242 0.92830 0.89628 0.96463 0.93680 0.93477 0.95683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 3 C -0.14 -1.40 5.70 -27.88 -0.16 -1.55 16 4 C 0.51 6.88 7.79 -10.99 -0.09 6.79 16 5 O -0.55 -9.35 15.65 5.55 0.09 -9.27 16 6 N -0.72 -9.57 5.01 -53.80 -0.27 -9.84 16 7 C 0.15 2.18 2.35 -67.93 -0.16 2.02 16 8 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 9 C -0.16 -2.34 8.76 37.16 0.33 -2.02 16 10 C -0.11 -1.86 2.27 -90.49 -0.21 -2.07 16 11 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 12 C -0.10 -1.66 4.89 -26.68 -0.13 -1.79 16 13 C -0.14 -2.68 6.08 -26.62 -0.16 -2.85 16 14 C 0.17 3.98 5.30 -3.72 -0.02 3.96 16 15 N -0.59 -14.31 2.99 -172.33 -0.52 -14.83 16 16 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 17 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 18 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 19 N -0.90 -25.76 11.20 55.49 0.62 -25.14 16 20 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.15 2.96 5.26 -3.71 -0.02 2.94 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 4.82 7.28 -40.82 -0.30 4.53 16 33 H 0.07 0.92 6.59 -51.93 -0.34 0.57 16 34 H 0.06 0.96 6.23 -51.93 -0.32 0.63 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.97 6.63 -51.93 -0.34 0.62 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 44 H 0.03 0.51 6.06 -51.93 -0.31 0.19 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -30.36 338.95 -8.34 -38.70 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.72 Total: 2.47 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.62 Total: -3.44 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.16 Total: -49.80 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.36 -8.34 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566958676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.639 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds