Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.50699 * 109.47390 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99541 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00061 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99645 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47538 * 35.00237 * 7 6 4 9 9 C 1.53001 * 109.47383 * 274.99607 * 7 6 4 10 10 C 1.53005 * 109.46507 * 155.00043 * 7 6 4 11 11 H 1.08994 * 109.50160 * 305.05898 * 10 7 6 12 12 C 1.53046 * 109.49151 * 184.99658 * 10 7 6 13 13 C 1.53045 * 109.52442 * 178.65388 * 12 10 7 14 14 C 1.53171 * 109.32375 * 61.37513 * 13 12 10 15 15 N 1.46926 * 108.76737 * 305.35440 * 14 13 12 16 16 C 1.36941 * 120.62963 * 233.58780 * 15 14 13 17 17 H 1.07994 * 119.99972 * 151.84875 * 16 15 14 18 18 C 1.38815 * 119.99858 * 331.84727 * 16 15 14 19 19 N 1.31614 * 120.00095 * 343.06725 * 18 16 15 20 20 Si 1.86794 * 119.99885 * 163.06326 * 18 16 15 21 21 H 1.48509 * 109.47251 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47263 * 120.00209 * 20 18 16 23 23 H 1.48500 * 109.47387 * 240.00602 * 20 18 16 24 24 C 1.46921 * 118.73936 * 53.61360 * 15 14 13 25 25 H 1.09002 * 109.47021 * 299.99679 * 1 2 3 26 26 H 1.09002 * 109.47317 * 59.99895 * 1 2 3 27 27 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47021 * 240.00321 * 2 1 3 29 29 H 1.08994 * 109.47382 * 120.00427 * 2 1 3 30 30 H 1.09002 * 109.46862 * 60.00224 * 3 2 1 31 31 H 1.09002 * 109.47062 * 300.00261 * 3 2 1 32 32 H 0.96999 * 119.99836 * 0.02562 * 6 4 3 33 33 H 1.08990 * 109.47329 * 180.02562 * 9 7 6 34 34 H 1.09005 * 109.47010 * 300.00694 * 9 7 6 35 35 H 1.09004 * 109.47045 * 59.99905 * 9 7 6 36 36 H 1.08996 * 109.46609 * 298.66732 * 12 10 7 37 37 H 1.08997 * 109.46181 * 58.64736 * 12 10 7 38 38 H 1.08996 * 109.49917 * 181.31053 * 13 12 10 39 39 H 1.08996 * 109.50068 * 301.41569 * 13 12 10 40 40 H 1.08998 * 109.58722 * 185.56994 * 14 13 12 41 41 H 1.09001 * 109.59287 * 65.13989 * 14 13 12 42 42 H 0.97003 * 120.00125 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.58737 * 186.60337 * 24 15 14 44 44 H 1.08997 * 109.59143 * 66.17515 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6097 -0.0003 8 1 6.0492 1.7682 -0.5900 9 6 6.1959 2.4835 1.4367 10 6 6.1957 3.9173 -0.6095 11 1 5.7605 4.0515 -1.5997 12 6 7.7210 3.8665 -0.7245 13 6 8.2291 5.1605 -1.3646 14 6 7.8509 6.3486 -0.4750 15 7 6.4007 6.3207 -0.2403 16 6 5.6291 7.4196 -0.5092 17 1 4.5904 7.2973 -0.7779 18 6 6.1823 8.6907 -0.4363 19 7 7.3197 8.8780 0.1988 20 14 5.3124 10.1352 -1.2399 21 1 4.0608 9.6629 -1.8849 22 1 4.9839 11.1515 -0.2081 23 1 6.2003 10.7399 -2.2651 24 6 5.7943 5.0915 0.2889 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7358 3.4498 0.0009 33 1 7.2858 2.4839 1.4367 34 1 5.8326 3.3252 2.0264 35 1 5.8326 1.5520 1.8707 36 1 8.1567 3.7573 0.2686 37 1 8.0104 3.0173 -1.3434 38 1 9.3132 5.1142 -1.4677 39 1 7.7746 5.2829 -2.3477 40 1 8.1226 7.2792 -0.9732 41 1 8.3766 6.2743 0.4770 42 1 7.7064 9.7662 0.2494 43 1 4.7090 5.1927 0.2947 44 1 6.1523 4.9147 1.3031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566958676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = -63.414435 kcal Electronic energy + Delta-G solvation = -21359.215347 eV Core-core repulsion = 18310.168995 eV Total energy + Delta-G solvation = -3049.046352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05979 -39.51409 -36.72464 -35.20766 -34.65548 -32.52478 -32.24098 -29.65172 -28.55231 -27.21414 -25.24341 -23.91126 -22.99411 -21.85119 -21.07975 -20.06700 -18.70805 -17.94384 -17.01841 -16.81256 -16.68638 -15.94927 -15.66502 -15.25335 -15.07718 -14.93389 -14.66884 -14.10197 -13.96384 -13.90105 -13.71538 -13.31253 -13.03787 -12.84054 -12.78942 -12.72624 -12.58116 -12.24664 -12.04713 -11.99718 -11.92773 -11.67923 -11.60213 -11.50091 -11.26668 -11.06598 -10.73224 -10.51576 -10.01581 -8.63881 -7.85195 -5.30531 1.46866 1.49486 1.59032 1.71679 2.29907 2.52306 3.29757 3.59968 3.83238 3.95408 4.00232 4.03498 4.09348 4.15349 4.35249 4.42635 4.48296 4.60493 4.67787 4.70310 4.73789 4.79667 4.85897 4.91097 4.93748 4.98972 5.06268 5.14767 5.21233 5.26246 5.29787 5.30440 5.35603 5.47121 5.48613 5.56906 5.62550 5.69661 5.79835 6.41080 6.63078 7.16978 7.31931 7.88869 8.40708 9.21000 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.004532 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.162540 B = 6176.923456 C = 7184.962277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.507 3.493 5 O -0.588 6.588 6 N -0.719 5.719 7 C 0.158 3.842 8 H 0.075 0.925 9 C -0.158 4.158 10 C -0.096 4.096 11 H 0.065 0.935 12 C -0.098 4.098 13 C -0.131 4.131 14 C 0.174 3.826 15 N -0.610 5.610 16 C -0.260 4.260 17 H 0.070 0.930 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.151 3.849 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.410 0.590 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.050 0.950 41 H -0.005 1.005 42 H 0.248 0.752 43 H 0.055 0.945 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 -13.895 -0.939 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.177 4.177 4 C 0.296 3.704 5 O -0.469 6.469 6 N -0.370 5.370 7 C 0.052 3.948 8 H 0.093 0.907 9 C -0.216 4.216 10 C -0.117 4.117 11 H 0.084 0.916 12 C -0.136 4.136 13 C -0.170 4.170 14 C 0.049 3.951 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.026 3.974 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.246 0.754 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.367 -14.479 -0.914 16.748 hybrid contribution -0.100 1.553 -0.182 1.567 sum -8.467 -12.926 -1.096 15.491 Atomic orbital electron populations 1.21763 0.93736 1.02386 1.02649 1.21238 0.96652 0.94628 1.02033 1.21793 0.89156 1.00395 1.06322 1.21392 0.91699 0.82950 0.74364 1.90656 1.71698 1.32695 1.51855 1.46229 1.07210 1.09165 1.74438 1.20799 0.79860 0.97244 0.96872 0.90690 1.22187 1.01912 1.01369 0.96132 1.21724 0.96860 0.93629 0.99488 0.91643 1.21417 0.94099 0.97114 1.00996 1.22011 1.00005 0.96000 0.99007 1.20601 0.83504 0.96209 0.94819 1.44299 1.03970 1.10439 1.74568 1.19565 0.95171 0.85212 1.39071 0.91248 1.25770 0.98801 0.99939 1.00110 1.70195 1.22087 1.21535 1.44329 0.85264 0.78308 0.79518 0.77698 1.18844 1.22080 1.22017 1.21118 0.96471 0.85556 0.94265 0.91802 0.91843 0.92170 0.92825 0.92785 0.86899 0.86987 0.75398 0.90969 0.92116 0.93233 0.91915 0.90954 0.91357 0.93266 0.93184 0.98650 0.94250 0.92648 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.11 -1.92 5.22 30.59 0.16 -1.76 16 3 C -0.14 -2.33 5.70 29.85 0.17 -2.16 16 4 C 0.51 12.82 7.79 87.66 0.68 13.51 16 5 O -0.59 -19.47 15.65 -3.05 -0.05 -19.52 16 6 N -0.72 -17.64 5.01 -442.53 -2.22 -19.86 16 7 C 0.16 4.34 2.35 44.99 0.11 4.44 16 8 H 0.07 2.21 7.58 -2.39 -0.02 2.20 16 9 C -0.16 -4.26 8.76 71.98 0.63 -3.63 16 10 C -0.10 -3.01 2.27 -10.71 -0.02 -3.04 16 11 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.10 -3.04 4.89 30.62 0.15 -2.89 16 13 C -0.13 -4.80 6.08 30.67 0.19 -4.61 16 14 C 0.17 8.29 5.30 86.36 0.46 8.74 16 15 N -0.61 -29.47 2.99 -699.15 -2.09 -31.56 16 16 C -0.26 -13.82 9.58 84.03 0.81 -13.02 16 17 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 18 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 19 N -0.94 -54.77 11.20 21.65 0.24 -54.52 16 20 Si 0.96 43.97 29.59 68.60 2.03 46.00 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.15 5.75 5.26 86.36 0.45 6.20 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 29 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 8.88 7.28 -92.71 -0.68 8.20 16 33 H 0.07 1.85 6.59 -2.39 -0.02 1.84 16 34 H 0.06 1.69 6.23 -2.38 -0.01 1.67 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.92 6.63 -2.39 -0.02 1.91 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 2.72 6.06 -2.39 -0.01 2.71 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.06 1.98 6.75 -2.39 -0.02 1.96 16 44 H 0.02 0.86 6.06 -2.39 -0.01 0.85 16 Total: -1.00 -65.90 338.95 3.11 -62.78 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.29 Total: 18.44 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.91 Total: -1.76 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -4.07 Total: -105.94 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.90 3.11 -62.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566958676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.631 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds