Wall clock time and date at job start Mon Mar 30 2020 01:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53012 * 109.47127 * 2 1 4 4 H 1.08995 * 109.46759 * 305.00094 * 3 2 1 5 5 C 1.52998 * 109.47110 * 64.99825 * 3 2 1 6 6 C 1.52992 * 109.47106 * 184.99869 * 3 2 1 7 7 H 1.09004 * 109.47308 * 299.99986 * 6 3 2 8 8 C 1.52998 * 109.47083 * 179.97438 * 6 3 2 9 9 C 1.50701 * 109.47038 * 59.99767 * 6 3 2 10 10 O 1.21282 * 120.00097 * 0.02562 * 9 6 3 11 11 N 1.34778 * 119.99738 * 180.27197 * 9 6 3 12 12 C 1.46504 * 119.99901 * 179.72760 * 11 9 6 13 13 C 1.52998 * 109.47338 * 176.05276 * 12 11 9 14 14 N 1.46502 * 115.54951 * 279.55768 * 13 12 11 15 15 C 1.36939 * 120.00001 * 294.63042 * 14 13 12 16 16 H 1.07998 * 119.99776 * 353.16948 * 15 14 13 17 17 C 1.38807 * 120.00047 * 173.16479 * 15 14 13 18 18 N 1.31614 * 120.00438 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47342 * 90.00269 * 19 17 15 21 21 H 1.48498 * 109.47359 * 210.00011 * 19 17 15 22 22 H 1.48498 * 109.47303 * 330.00339 * 19 17 15 23 23 C 1.52995 * 117.50178 * 133.88310 * 13 12 11 24 24 C 1.53009 * 117.50004 * 65.22284 * 13 12 11 25 25 H 1.09001 * 109.47172 * 59.99884 * 1 2 3 26 26 H 1.08995 * 109.47266 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47251 * 300.00203 * 1 2 3 28 28 H 1.09002 * 109.47233 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47082 * 119.99186 * 2 1 3 30 30 H 1.08995 * 109.47328 * 180.02562 * 5 3 2 31 31 H 1.09009 * 109.47315 * 300.00505 * 5 3 2 32 32 H 1.09002 * 109.47450 * 59.99900 * 5 3 2 33 33 H 1.09002 * 109.47090 * 299.99622 * 8 6 3 34 34 H 1.08997 * 109.47267 * 59.99721 * 8 6 3 35 35 H 1.09008 * 109.47004 * 180.02562 * 8 6 3 36 36 H 0.97002 * 120.00413 * 359.73033 * 11 9 6 37 37 H 1.09004 * 109.46967 * 296.05080 * 12 11 9 38 38 H 1.08998 * 109.47092 * 56.05152 * 12 11 9 39 39 H 0.96998 * 120.00119 * 114.63487 * 14 13 12 40 40 H 0.96994 * 120.00799 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.50073 * 0.02562 * 23 13 12 42 42 H 1.09001 * 117.50008 * 145.01904 * 23 13 12 43 43 H 1.08995 * 117.49577 * 214.97940 * 24 13 12 44 44 H 1.08999 * 117.49191 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1267 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9054 0.7162 8 6 4.0747 2.8869 -0.1263 9 6 3.9634 0.7706 -1.4133 10 8 3.1118 0.3325 -2.1575 11 7 5.2666 0.6504 -1.7356 12 6 5.6544 -0.0099 -2.9845 13 6 7.1725 0.0737 -3.1557 14 7 7.6807 1.3459 -3.6749 15 6 7.3637 1.7419 -4.9469 16 1 6.8331 1.0699 -5.6051 17 6 7.7243 3.0069 -5.3901 18 7 8.3713 3.8256 -4.5881 19 14 7.2912 3.5472 -7.1250 20 1 5.9575 4.2002 -7.1217 21 1 8.3119 4.5090 -7.6133 22 1 7.2599 2.3621 -8.0193 23 6 7.9083 -1.2024 -3.5691 24 6 8.0402 -0.6716 -2.1394 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.9981 3.1544 1.3072 31 1 0.5488 2.1253 1.3969 32 1 2.0698 1.5876 2.1492 33 1 3.6401 3.4255 -0.9684 34 1 3.7863 3.3747 0.8048 35 1 5.1611 2.8882 -0.2163 36 1 5.9478 1.0011 -1.1406 37 1 5.3496 -1.0560 -2.9523 38 1 5.1664 0.4851 -3.8240 39 1 8.2417 1.9077 -3.1177 40 1 8.6236 4.7095 -4.8980 41 1 7.3108 -2.1016 -3.7196 42 1 8.7706 -1.0955 -4.2271 43 1 8.9892 -0.2156 -1.8576 44 1 7.5294 -1.2211 -1.3487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699667490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:35 Heat of formation + Delta-G solvation = -24.582709 kcal Electronic energy + Delta-G solvation = -21265.934075 eV Core-core repulsion = 18218.571593 eV Total energy + Delta-G solvation = -3047.362482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89727 -37.74521 -36.31099 -33.83155 -33.04196 -32.13246 -29.70349 -28.72118 -26.51133 -25.58793 -23.90312 -22.64133 -21.84583 -20.35412 -19.59650 -18.93629 -17.15913 -16.87453 -15.75250 -15.41604 -15.04991 -14.79044 -14.36368 -14.00350 -13.79750 -13.43240 -13.29899 -13.07462 -12.69223 -12.64540 -12.08510 -12.02509 -11.83348 -11.66797 -11.56240 -11.37764 -10.98513 -10.97871 -10.91000 -10.57295 -10.49263 -10.36054 -10.26376 -10.18532 -9.78226 -9.44794 -9.17049 -8.81750 -8.50788 -7.06746 -5.84539 -3.14963 3.01960 3.41262 3.47362 3.48037 3.55932 4.42431 4.58690 4.66383 4.86881 4.92577 5.19374 5.24213 5.30672 5.35571 5.38531 5.44790 5.47981 5.51486 5.61135 5.63105 5.67803 5.82830 5.83189 5.94754 5.98642 6.02996 6.07285 6.08455 6.22095 6.26773 6.30857 6.41405 6.48460 6.56185 6.60793 6.70369 6.75715 6.96247 7.69458 7.96649 8.34173 8.65020 9.45213 9.98640 10.34205 11.37363 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.004785 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.768106 B = 5849.640282 C = 6413.966561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.070 4.070 4 H 0.076 0.924 5 C -0.150 4.150 6 C -0.106 4.106 7 H 0.091 0.909 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.545 6.545 11 N -0.711 5.711 12 C 0.147 3.853 13 C 0.129 3.871 14 N -0.688 5.688 15 C -0.238 4.238 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.188 4.188 24 C -0.187 4.187 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -6.186 12.837 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.207 4.207 6 C -0.127 4.127 7 H 0.109 0.891 8 C -0.204 4.204 9 C 0.299 3.701 10 O -0.424 6.424 11 N -0.360 5.360 12 C 0.022 3.978 13 C 0.035 3.965 14 N -0.328 5.328 15 C -0.369 4.369 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.229 4.229 24 C -0.225 4.225 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.464 -6.422 12.100 16.650 hybrid contribution 0.445 0.762 -0.524 1.026 sum -9.019 -5.660 11.575 15.728 Atomic orbital electron populations 1.21760 0.96400 1.01012 1.01323 1.21834 0.95640 0.96415 1.03092 1.20930 0.92619 0.97096 0.98271 0.90593 1.21960 1.01298 1.00468 0.97002 1.21358 0.97667 0.97653 0.96054 0.89069 1.21834 1.01654 0.94205 1.02693 1.20566 0.82477 0.79236 0.87796 1.90600 1.49806 1.49522 1.52473 1.45937 1.07041 1.59429 1.23589 1.21225 0.94434 0.95772 0.86402 1.20182 0.89288 0.87313 0.99710 1.41770 1.58817 1.17806 1.14358 1.19165 1.31419 0.97202 0.89125 0.91017 1.24754 1.01027 0.96297 0.98334 1.69652 1.44296 1.08369 1.35523 0.86199 0.77635 0.78279 0.84158 1.21593 1.21755 1.20604 1.23369 1.04109 0.98491 0.96960 1.23074 1.01900 1.04706 0.92801 0.92833 0.93311 0.93205 0.89006 0.93156 0.92420 0.92445 0.92882 0.91940 0.91505 0.91803 0.76751 0.92723 0.90384 0.77809 0.93434 0.89929 0.88680 0.89035 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.13 -1.62 5.14 -26.73 -0.14 -1.75 16 3 C -0.07 -0.84 1.61 -90.62 -0.15 -0.98 16 4 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 5 C -0.15 -1.41 8.60 37.16 0.32 -1.09 16 6 C -0.11 -1.31 2.32 -91.78 -0.21 -1.52 16 7 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 8 C -0.15 -1.74 8.74 37.16 0.32 -1.41 16 9 C 0.51 8.29 6.83 -10.98 -0.08 8.22 16 10 O -0.55 -10.54 13.67 5.56 0.08 -10.46 16 11 N -0.71 -11.49 5.41 -60.29 -0.33 -11.81 16 12 C 0.15 2.72 5.72 -4.04 -0.02 2.69 16 13 C 0.13 2.45 2.16 -131.82 -0.28 2.17 16 14 N -0.69 -16.39 5.49 -47.23 -0.26 -16.65 16 15 C -0.24 -6.43 9.56 -15.06 -0.14 -6.58 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.28 13.07 55.49 0.73 -26.56 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 C -0.19 -3.22 10.11 -26.70 -0.27 -3.49 16 24 C -0.19 -2.91 10.07 -26.69 -0.27 -3.18 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.09 1.38 5.42 -51.93 -0.28 1.10 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.06 0.51 6.57 -51.92 -0.34 0.16 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 35 H 0.06 0.78 7.57 -51.92 -0.39 0.38 16 36 H 0.40 5.82 7.84 -40.82 -0.32 5.50 16 37 H 0.05 0.94 7.94 -51.93 -0.41 0.53 16 38 H 0.08 1.71 7.79 -51.93 -0.40 1.31 16 39 H 0.39 9.78 8.05 -40.82 -0.33 9.45 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -29.98 350.73 -7.86 -37.84 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.68 Total: 13.54 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.65 Total: -8.46 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.14 Total: -55.02 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.98 -7.86 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699667490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.258 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds