Wall clock time and date at job start Mon Mar 30 2020 01:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53012 * 109.47127 * 2 1 4 4 H 1.08995 * 109.46759 * 305.00094 * 3 2 1 5 5 C 1.52998 * 109.47110 * 64.99825 * 3 2 1 6 6 C 1.52992 * 109.47106 * 184.99869 * 3 2 1 7 7 H 1.09004 * 109.47308 * 299.99986 * 6 3 2 8 8 C 1.52998 * 109.47083 * 179.97438 * 6 3 2 9 9 C 1.50701 * 109.47038 * 59.99767 * 6 3 2 10 10 O 1.21282 * 120.00097 * 0.02562 * 9 6 3 11 11 N 1.34778 * 119.99738 * 180.27197 * 9 6 3 12 12 C 1.46504 * 119.99901 * 179.72760 * 11 9 6 13 13 C 1.52998 * 109.47338 * 176.05276 * 12 11 9 14 14 N 1.46502 * 115.54951 * 279.55768 * 13 12 11 15 15 C 1.36939 * 120.00001 * 294.63042 * 14 13 12 16 16 H 1.07998 * 119.99776 * 353.16948 * 15 14 13 17 17 C 1.38807 * 120.00047 * 173.16479 * 15 14 13 18 18 N 1.31614 * 120.00438 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47342 * 90.00269 * 19 17 15 21 21 H 1.48498 * 109.47359 * 210.00011 * 19 17 15 22 22 H 1.48498 * 109.47303 * 330.00339 * 19 17 15 23 23 C 1.52995 * 117.50178 * 133.88310 * 13 12 11 24 24 C 1.53009 * 117.50004 * 65.22284 * 13 12 11 25 25 H 1.09001 * 109.47172 * 59.99884 * 1 2 3 26 26 H 1.08995 * 109.47266 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47251 * 300.00203 * 1 2 3 28 28 H 1.09002 * 109.47233 * 240.00352 * 2 1 3 29 29 H 1.08997 * 109.47082 * 119.99186 * 2 1 3 30 30 H 1.08995 * 109.47328 * 180.02562 * 5 3 2 31 31 H 1.09009 * 109.47315 * 300.00505 * 5 3 2 32 32 H 1.09002 * 109.47450 * 59.99900 * 5 3 2 33 33 H 1.09002 * 109.47090 * 299.99622 * 8 6 3 34 34 H 1.08997 * 109.47267 * 59.99721 * 8 6 3 35 35 H 1.09008 * 109.47004 * 180.02562 * 8 6 3 36 36 H 0.97002 * 120.00413 * 359.73033 * 11 9 6 37 37 H 1.09004 * 109.46967 * 296.05080 * 12 11 9 38 38 H 1.08998 * 109.47092 * 56.05152 * 12 11 9 39 39 H 0.96998 * 120.00119 * 114.63487 * 14 13 12 40 40 H 0.96994 * 120.00799 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.50073 * 0.02562 * 23 13 12 42 42 H 1.09001 * 117.50008 * 145.01904 * 23 13 12 43 43 H 1.08995 * 117.49577 * 214.97940 * 24 13 12 44 44 H 1.08999 * 117.49191 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1267 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9054 0.7162 8 6 4.0747 2.8869 -0.1263 9 6 3.9634 0.7706 -1.4133 10 8 3.1118 0.3325 -2.1575 11 7 5.2666 0.6504 -1.7356 12 6 5.6544 -0.0099 -2.9845 13 6 7.1725 0.0737 -3.1557 14 7 7.6807 1.3459 -3.6749 15 6 7.3637 1.7419 -4.9469 16 1 6.8331 1.0699 -5.6051 17 6 7.7243 3.0069 -5.3901 18 7 8.3713 3.8256 -4.5881 19 14 7.2912 3.5472 -7.1250 20 1 5.9575 4.2002 -7.1217 21 1 8.3119 4.5090 -7.6133 22 1 7.2599 2.3621 -8.0193 23 6 7.9083 -1.2024 -3.5691 24 6 8.0402 -0.6716 -2.1394 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.9981 3.1544 1.3072 31 1 0.5488 2.1253 1.3969 32 1 2.0698 1.5876 2.1492 33 1 3.6401 3.4255 -0.9684 34 1 3.7863 3.3747 0.8048 35 1 5.1611 2.8882 -0.2163 36 1 5.9478 1.0011 -1.1406 37 1 5.3496 -1.0560 -2.9523 38 1 5.1664 0.4851 -3.8240 39 1 8.2417 1.9077 -3.1177 40 1 8.6236 4.7095 -4.8980 41 1 7.3108 -2.1016 -3.7196 42 1 8.7706 -1.0955 -4.2271 43 1 8.9892 -0.2156 -1.8576 44 1 7.5294 -1.2211 -1.3487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699667490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:35 Heat of formation + Delta-G solvation = -43.552148 kcal Electronic energy + Delta-G solvation = -21266.756651 eV Core-core repulsion = 18218.571593 eV Total energy + Delta-G solvation = -3048.185059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15621 -39.18345 -37.41615 -35.33828 -34.86062 -33.15005 -31.64873 -29.62077 -27.83727 -26.56258 -25.93772 -23.73987 -23.14386 -21.42334 -20.93754 -20.28374 -19.14147 -18.18358 -17.20002 -16.81893 -16.23452 -16.05928 -15.82719 -15.58568 -15.05514 -14.92598 -14.54934 -14.38371 -13.80794 -13.59605 -13.56405 -13.29030 -12.96611 -12.91428 -12.87992 -12.55939 -12.42561 -12.33681 -12.28565 -12.21292 -11.85031 -11.78045 -11.51667 -11.43586 -11.26464 -10.94558 -10.81866 -10.33818 -9.91690 -9.02526 -7.97910 -5.26199 1.43515 1.45348 1.52571 1.73806 2.28300 2.51364 3.09402 3.37820 3.65851 3.69346 3.83833 3.86494 3.95423 4.19084 4.25776 4.32399 4.42337 4.44776 4.60706 4.65361 4.74548 4.78556 4.81940 4.85767 4.93242 4.96381 5.02881 5.05338 5.13059 5.17485 5.20624 5.22363 5.34230 5.36907 5.39244 5.52599 5.53464 5.60670 5.72467 6.25927 6.68842 7.31779 7.37288 8.05561 8.29403 9.24434 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.004785 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.768106 B = 5849.640282 C = 6413.966561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C -0.070 4.070 4 H 0.048 0.952 5 C -0.144 4.144 6 C -0.097 4.097 7 H 0.121 0.879 8 C -0.143 4.143 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.706 5.706 12 C 0.160 3.840 13 C 0.098 3.902 14 N -0.697 5.697 15 C -0.232 4.232 16 H 0.067 0.933 17 C -0.065 4.065 18 N -0.962 5.962 19 Si 0.961 3.039 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.272 1.272 23 C -0.185 4.185 24 C -0.151 4.151 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.408 0.592 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -7.215 14.995 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.089 4.089 4 H 0.066 0.934 5 C -0.201 4.201 6 C -0.118 4.118 7 H 0.139 0.861 8 C -0.200 4.200 9 C 0.294 3.706 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.034 3.966 13 C 0.006 3.994 14 N -0.336 5.336 15 C -0.363 4.363 16 H 0.085 0.915 17 C -0.258 4.258 18 N -0.612 5.612 19 Si 0.791 3.209 20 H -0.221 1.221 21 H -0.219 1.219 22 H -0.197 1.197 23 C -0.225 4.225 24 C -0.189 4.189 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.779 -7.494 14.273 18.855 hybrid contribution 0.513 0.981 -1.180 1.618 sum -9.266 -6.513 13.093 17.312 Atomic orbital electron populations 1.21743 0.95451 1.01516 1.01562 1.21773 0.96558 0.96338 1.02198 1.20920 0.92075 0.96963 0.98903 0.93376 1.21919 1.01921 1.00644 0.95632 1.21404 0.98189 0.97671 0.94554 0.86089 1.21831 1.01211 0.93789 1.03203 1.21364 0.81881 0.78595 0.88803 1.90595 1.50702 1.50983 1.53973 1.45914 1.07551 1.59292 1.22884 1.20919 0.93599 0.96100 0.86002 1.20378 0.89769 0.86121 1.03174 1.41791 1.58981 1.19476 1.13337 1.19394 1.29606 0.96901 0.90434 0.91518 1.25398 1.02102 0.96753 1.01537 1.69770 1.46119 1.08452 1.36900 0.85325 0.76836 0.77896 0.80859 1.22067 1.21866 1.19685 1.23382 1.03202 0.97913 0.98053 1.23157 1.00953 1.02199 0.92584 0.94237 0.92720 0.91287 0.92303 0.91469 0.91789 0.91777 0.91199 0.94368 0.88570 0.92134 0.75660 0.91278 0.94823 0.78946 0.94018 0.87611 0.90240 0.88854 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.67 71.98 0.70 -2.25 16 2 C -0.13 -3.04 5.14 30.60 0.16 -2.89 16 3 C -0.07 -1.57 1.61 -10.79 -0.02 -1.59 16 4 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 5 C -0.14 -2.27 8.60 71.98 0.62 -1.65 16 6 C -0.10 -2.24 2.32 -11.54 -0.03 -2.26 16 7 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 8 C -0.14 -3.19 8.74 71.98 0.63 -2.56 16 9 C 0.51 16.23 6.83 87.66 0.60 16.83 16 10 O -0.58 -23.07 13.67 -3.04 -0.04 -23.11 16 11 N -0.71 -22.40 5.41 -463.05 -2.51 -24.91 16 12 C 0.16 5.88 5.72 86.38 0.49 6.38 16 13 C 0.10 3.64 2.16 3.60 0.01 3.64 16 14 N -0.70 -33.52 5.49 -303.34 -1.66 -35.18 16 15 C -0.23 -12.70 9.56 84.03 0.80 -11.90 16 16 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.96 -57.49 13.07 21.65 0.28 -57.21 16 19 Si 0.96 46.66 29.55 68.60 2.03 48.69 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.19 -5.98 10.11 30.62 0.31 -5.67 16 24 C -0.15 -4.29 10.07 30.62 0.31 -3.98 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.12 6.56 -2.39 -0.02 1.11 16 28 H 0.06 1.78 5.42 -2.39 -0.01 1.77 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 31 H 0.06 0.94 6.57 -2.38 -0.02 0.92 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.58 6.43 -2.39 -0.02 1.57 16 35 H 0.06 1.39 7.57 -2.38 -0.02 1.37 16 36 H 0.41 11.34 7.84 -92.71 -0.73 10.61 16 37 H 0.07 2.32 7.94 -2.38 -0.02 2.30 16 38 H 0.03 1.52 7.79 -2.39 -0.02 1.51 16 39 H 0.38 19.30 8.05 -92.71 -0.75 18.55 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.11 2.92 8.08 -2.39 -0.02 2.90 16 42 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -66.83 350.73 2.65 -64.18 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.49 Total: 38.67 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.05 Total: -11.13 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -3.89 Total: -117.30 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.04 Total: -23.11 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -66.83 2.65 -64.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699667490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.625 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds