Wall clock time and date at job start Mon Mar 30 2020 00:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.50705 * 109.47243 * 179.97438 * 3 2 1 5 5 O 1.21272 * 119.99646 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99896 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63252 * 354.34015 * 6 4 3 8 8 C 1.53187 * 108.78029 * 233.58626 * 7 6 4 9 9 C 1.53040 * 109.31115 * 305.36859 * 8 7 6 10 10 C 1.53041 * 109.54051 * 61.36046 * 9 8 7 11 11 H 1.08999 * 109.49646 * 178.68707 * 10 9 8 12 12 C 1.52994 * 109.49545 * 58.58963 * 10 9 8 13 13 C 1.46924 * 120.63106 * 174.05839 * 6 4 3 14 14 H 1.08994 * 109.59320 * 246.20256 * 13 6 4 15 15 C 1.53003 * 109.58434 * 6.62965 * 13 6 4 16 16 N 1.46495 * 109.47019 * 292.89554 * 15 13 6 17 17 C 1.36937 * 120.00109 * 185.82539 * 16 15 13 18 18 H 1.08003 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47000 * 119.99636 * 21 19 17 24 24 H 1.48496 * 109.47010 * 239.99602 * 21 19 17 25 25 H 1.09003 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47507 * 300.00268 * 1 2 3 27 27 H 1.09007 * 109.46686 * 60.00185 * 1 2 3 28 28 H 1.09002 * 109.47391 * 239.99692 * 2 1 3 29 29 H 1.09007 * 109.46686 * 119.99815 * 2 1 3 30 30 H 1.08992 * 109.46970 * 300.00052 * 3 2 1 31 31 H 1.09002 * 109.47115 * 59.99523 * 3 2 1 32 32 H 1.09000 * 109.58691 * 353.37644 * 7 6 4 33 33 H 1.09004 * 109.58634 * 113.79662 * 7 6 4 34 34 H 1.09006 * 109.49533 * 65.31374 * 8 7 6 35 35 H 1.08996 * 109.50108 * 185.41398 * 8 7 6 36 36 H 1.08996 * 109.45941 * 181.38506 * 9 8 7 37 37 H 1.09002 * 109.45561 * 301.33956 * 9 8 7 38 38 H 1.08995 * 109.47478 * 59.99899 * 12 10 9 39 39 H 1.09007 * 109.47034 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47051 * 299.99788 * 12 10 9 41 41 H 1.09004 * 109.47431 * 52.89732 * 15 13 6 42 42 H 1.09002 * 109.46783 * 172.89550 * 15 13 6 43 43 H 0.96997 * 119.99853 * 5.82894 * 16 15 13 44 44 H 0.96993 * 120.00371 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0013 7 6 3.5058 3.8870 -0.1233 8 6 4.1143 4.6818 -1.2829 9 6 5.6221 4.8245 -1.0625 10 6 6.2689 3.4377 -1.0354 11 1 7.3457 3.5411 -0.9017 12 6 5.9843 2.7157 -2.3538 13 6 5.6842 2.6291 0.1328 14 1 5.9600 3.0961 1.0782 15 6 6.2222 1.1975 0.0882 16 7 5.7806 0.4725 1.2821 17 6 6.2392 -0.7953 1.5221 18 1 6.9268 -1.2605 0.8313 19 6 5.8204 -1.4825 2.6531 20 7 4.9828 -0.9153 3.4952 21 14 6.4465 -3.2116 2.9807 22 1 7.3707 -3.6180 1.8917 23 1 7.1676 -3.2393 4.2786 24 1 5.2987 -4.1523 3.0319 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.4513 3.6974 -0.3240 33 1 3.6075 4.4545 0.8018 34 1 3.9319 4.1556 -2.2199 35 1 3.6577 5.6706 -1.3254 36 1 6.0538 5.4107 -1.8736 37 1 5.8041 5.3287 -0.1134 38 1 6.3975 3.2930 -3.1808 39 1 6.4447 1.7279 -2.3339 40 1 4.9073 2.6115 -2.4859 41 1 5.8448 0.6950 -0.8024 42 1 7.3116 1.2197 0.0587 43 1 5.1633 0.8905 1.9027 44 1 4.6904 -1.3953 4.2857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753802472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:47 Heat of formation + Delta-G solvation = 0.192380 kcal Electronic energy + Delta-G solvation = -22637.042145 eV Core-core repulsion = 19590.753991 eV Total energy + Delta-G solvation = -3046.288154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23992 -37.32028 -34.84046 -33.52702 -33.09842 -31.95225 -30.05142 -27.95263 -26.61241 -25.80089 -24.03572 -22.59800 -21.86787 -20.69015 -19.46317 -18.07989 -16.96319 -16.12920 -15.54206 -15.25532 -14.84830 -14.63094 -14.21119 -13.79367 -13.62148 -13.39754 -12.99977 -12.84854 -12.60361 -12.43350 -12.24176 -11.99079 -11.60771 -11.44801 -11.27866 -11.25002 -10.90371 -10.84208 -10.70640 -10.66871 -10.55038 -10.32063 -10.23240 -10.10578 -9.74971 -9.45133 -8.63935 -8.11647 -7.90633 -6.40281 -5.50063 -2.68675 3.51611 3.57506 3.61773 3.62579 3.64744 4.78729 4.80321 4.87404 4.98101 5.16161 5.20645 5.30283 5.37227 5.41397 5.49870 5.62175 5.71529 5.80421 5.81491 5.84319 5.86955 5.89396 5.93461 5.97577 6.02539 6.07323 6.12415 6.19646 6.27134 6.32633 6.39682 6.56710 6.58048 6.62532 6.77768 6.84125 7.06658 7.40331 7.92415 8.15380 8.68268 9.16764 9.79607 10.40706 10.74868 11.74093 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.007520 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.832371 B = 3722.753055 C = 4937.195339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.130 4.130 4 C 0.465 3.535 5 O -0.440 6.440 6 N -0.618 5.618 7 C 0.113 3.887 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.100 4.100 11 H 0.076 0.924 12 C -0.142 4.142 13 C 0.147 3.853 14 H 0.064 0.936 15 C 0.162 3.838 16 N -0.694 5.694 17 C -0.204 4.204 18 H 0.064 0.936 19 C -0.023 4.023 20 N -0.938 5.938 21 Si 0.899 3.101 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.011 0.989 43 H 0.379 0.621 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 13.305 -10.751 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.170 4.170 4 C 0.251 3.749 5 O -0.307 6.307 6 N -0.356 5.356 7 C -0.011 4.011 8 C -0.174 4.174 9 C -0.150 4.150 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.199 4.199 13 C 0.043 3.957 14 H 0.082 0.918 15 C 0.035 3.965 16 N -0.337 5.337 17 C -0.336 4.336 18 H 0.082 0.918 19 C -0.217 4.217 20 N -0.590 5.590 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.224 1.224 24 H -0.223 1.223 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.213 0.787 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.197 12.489 -10.782 17.299 hybrid contribution -0.019 -0.618 0.545 0.824 sum -5.216 11.872 -10.238 16.521 Atomic orbital electron populations 1.21773 0.96439 1.01391 1.00983 1.21260 0.94188 0.95273 1.04030 1.21639 0.93818 0.99276 1.02313 1.20537 0.89558 0.84113 0.80742 1.91135 1.67251 1.30560 1.41797 1.47850 1.06280 1.05340 1.76166 1.21539 0.96275 0.85423 0.97827 1.21960 0.96293 0.99858 0.99323 1.21517 0.95230 0.96688 1.01518 1.21531 0.99803 0.94706 0.95958 0.90596 1.21828 1.01945 1.00477 0.95696 1.21531 0.79487 0.98258 0.96410 0.91783 1.20907 0.94319 0.88011 0.93249 1.42287 1.53826 1.14869 1.22675 1.19197 1.19233 0.91514 1.03647 0.91797 1.24580 1.00772 0.98085 0.98263 1.69663 1.37947 1.37092 1.14273 0.86186 0.77708 0.85576 0.77282 1.20911 1.22411 1.22329 0.92843 0.93005 0.93408 0.91777 0.90348 0.90729 0.90304 0.90314 0.92278 0.91320 0.91524 0.92193 0.92030 0.93612 0.92057 0.92478 0.93933 0.97139 0.78707 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.11 -1.79 5.22 -26.73 -0.14 -1.93 16 3 C -0.13 -1.96 4.11 -27.88 -0.11 -2.08 16 4 C 0.47 8.77 6.96 -10.98 -0.08 8.70 16 5 O -0.44 -10.52 9.65 5.56 0.05 -10.46 16 6 N -0.62 -9.92 2.40 -164.97 -0.40 -10.32 16 7 C 0.11 1.33 6.32 -3.71 -0.02 1.31 16 8 C -0.14 -1.36 5.74 -26.61 -0.15 -1.51 16 9 C -0.11 -1.20 5.43 -26.69 -0.14 -1.34 16 10 C -0.10 -1.34 2.81 -90.28 -0.25 -1.59 16 11 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.14 -1.89 8.21 37.15 0.31 -1.59 16 13 C 0.15 2.52 2.68 -67.37 -0.18 2.34 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 15 C 0.16 3.56 4.16 -4.04 -0.02 3.54 16 16 N -0.69 -18.74 3.15 -59.91 -0.19 -18.93 16 17 C -0.20 -6.11 9.69 -15.06 -0.15 -6.26 16 18 H 0.06 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 20 N -0.94 -29.91 13.06 55.49 0.72 -29.18 16 21 Si 0.90 24.00 29.55 -169.99 -5.02 18.98 16 22 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 24 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.08 1.59 8.10 -51.92 -0.42 1.17 16 30 H 0.07 0.91 7.45 -51.93 -0.39 0.53 16 31 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 32 H 0.08 0.80 5.97 -51.93 -0.31 0.49 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.92 6.54 -51.92 -0.34 0.58 16 40 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 41 H 0.04 1.00 5.12 -51.93 -0.27 0.73 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.38 10.90 6.82 -40.82 -0.28 10.62 16 44 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -33.77 330.12 -8.21 -41.98 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.68 Total: 5.69 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.67 Total: -2.72 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.14 Total: -58.43 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.05 Total: -10.46 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.02 Total: 18.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.77 -8.21 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753802472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.169 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds