Wall clock time and date at job start Mon Mar 30 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.50705 * 109.47243 * 179.97438 * 3 2 1 5 5 O 1.21272 * 119.99646 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99896 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63252 * 354.34015 * 6 4 3 8 8 C 1.53187 * 108.78029 * 233.58626 * 7 6 4 9 9 C 1.53040 * 109.31115 * 305.36859 * 8 7 6 10 10 C 1.53041 * 109.54051 * 61.36046 * 9 8 7 11 11 H 1.08999 * 109.49646 * 178.68707 * 10 9 8 12 12 C 1.52994 * 109.49545 * 58.58963 * 10 9 8 13 13 C 1.46924 * 120.63106 * 174.05839 * 6 4 3 14 14 H 1.08994 * 109.59320 * 246.20256 * 13 6 4 15 15 C 1.53003 * 109.58434 * 6.62965 * 13 6 4 16 16 N 1.46495 * 109.47019 * 292.89554 * 15 13 6 17 17 C 1.36937 * 120.00109 * 185.82539 * 16 15 13 18 18 H 1.08003 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47043 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47000 * 119.99636 * 21 19 17 24 24 H 1.48496 * 109.47010 * 239.99602 * 21 19 17 25 25 H 1.09003 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47507 * 300.00268 * 1 2 3 27 27 H 1.09007 * 109.46686 * 60.00185 * 1 2 3 28 28 H 1.09002 * 109.47391 * 239.99692 * 2 1 3 29 29 H 1.09007 * 109.46686 * 119.99815 * 2 1 3 30 30 H 1.08992 * 109.46970 * 300.00052 * 3 2 1 31 31 H 1.09002 * 109.47115 * 59.99523 * 3 2 1 32 32 H 1.09000 * 109.58691 * 353.37644 * 7 6 4 33 33 H 1.09004 * 109.58634 * 113.79662 * 7 6 4 34 34 H 1.09006 * 109.49533 * 65.31374 * 8 7 6 35 35 H 1.08996 * 109.50108 * 185.41398 * 8 7 6 36 36 H 1.08996 * 109.45941 * 181.38506 * 9 8 7 37 37 H 1.09002 * 109.45561 * 301.33956 * 9 8 7 38 38 H 1.08995 * 109.47478 * 59.99899 * 12 10 9 39 39 H 1.09007 * 109.47034 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47051 * 299.99788 * 12 10 9 41 41 H 1.09004 * 109.47431 * 52.89732 * 15 13 6 42 42 H 1.09002 * 109.46783 * 172.89550 * 15 13 6 43 43 H 0.96997 * 119.99853 * 5.82894 * 16 15 13 44 44 H 0.96993 * 120.00371 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2210 2.6096 0.0013 7 6 3.5058 3.8870 -0.1233 8 6 4.1143 4.6818 -1.2829 9 6 5.6221 4.8245 -1.0625 10 6 6.2689 3.4377 -1.0354 11 1 7.3457 3.5411 -0.9017 12 6 5.9843 2.7157 -2.3538 13 6 5.6842 2.6291 0.1328 14 1 5.9600 3.0961 1.0782 15 6 6.2222 1.1975 0.0882 16 7 5.7806 0.4725 1.2821 17 6 6.2392 -0.7953 1.5221 18 1 6.9268 -1.2605 0.8313 19 6 5.8204 -1.4825 2.6531 20 7 4.9828 -0.9153 3.4952 21 14 6.4465 -3.2116 2.9807 22 1 7.3707 -3.6180 1.8917 23 1 7.1676 -3.2393 4.2786 24 1 5.2987 -4.1523 3.0319 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.4513 3.6974 -0.3240 33 1 3.6075 4.4545 0.8018 34 1 3.9319 4.1556 -2.2199 35 1 3.6577 5.6706 -1.3254 36 1 6.0538 5.4107 -1.8736 37 1 5.8041 5.3287 -0.1134 38 1 6.3975 3.2930 -3.1808 39 1 6.4447 1.7279 -2.3339 40 1 4.9073 2.6115 -2.4859 41 1 5.8448 0.6950 -0.8024 42 1 7.3116 1.2197 0.0587 43 1 5.1633 0.8905 1.9027 44 1 4.6904 -1.3953 4.2857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753802472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:46 Heat of formation + Delta-G solvation = -21.088654 kcal Electronic energy + Delta-G solvation = -22637.964959 eV Core-core repulsion = 19590.753991 eV Total energy + Delta-G solvation = -3047.210969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59060 -38.61066 -36.56036 -35.09288 -34.34050 -33.57503 -31.78560 -29.29263 -27.86179 -27.17973 -25.64410 -24.18895 -23.18845 -22.06942 -20.66760 -19.58157 -18.82417 -17.56363 -16.89061 -16.75464 -16.43405 -15.79697 -15.72489 -15.19929 -15.05265 -14.89548 -14.65128 -14.09249 -13.90575 -13.83578 -13.63436 -13.27055 -12.94618 -12.86259 -12.76933 -12.56926 -12.51951 -12.38249 -12.08080 -12.00176 -11.92176 -11.80058 -11.60851 -11.58407 -11.21967 -11.15175 -10.84275 -9.69647 -9.33556 -8.54788 -7.84029 -5.01301 1.41173 1.43658 1.52855 2.12440 2.30301 2.60774 3.48906 3.70497 3.81026 3.93387 4.03344 4.07992 4.16002 4.20233 4.31717 4.42882 4.46301 4.57029 4.62604 4.71326 4.73701 4.77085 4.84689 4.89106 4.90475 4.95482 5.01431 5.05654 5.15133 5.23759 5.28721 5.32179 5.33015 5.35333 5.42472 5.50187 5.51647 5.61537 5.95914 6.37382 6.81683 7.43296 7.74367 8.24483 8.47187 9.40808 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.007520 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.832371 B = 3722.753055 C = 4937.195339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.121 4.121 4 C 0.459 3.541 5 O -0.507 6.507 6 N -0.613 5.613 7 C 0.103 3.897 8 C -0.129 4.129 9 C -0.107 4.107 10 C -0.094 4.094 11 H 0.079 0.921 12 C -0.136 4.136 13 C 0.150 3.850 14 H 0.053 0.947 15 C 0.167 3.833 16 N -0.700 5.700 17 C -0.208 4.208 18 H 0.058 0.942 19 C -0.085 4.085 20 N -0.971 5.971 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.292 1.292 24 H -0.299 1.299 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.024 0.976 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.003 0.997 43 H 0.367 0.633 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 15.859 -12.312 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C -0.161 4.161 4 C 0.246 3.754 5 O -0.379 6.379 6 N -0.351 5.351 7 C -0.018 4.018 8 C -0.167 4.167 9 C -0.145 4.145 10 C -0.114 4.114 11 H 0.097 0.903 12 C -0.193 4.193 13 C 0.046 3.954 14 H 0.071 0.929 15 C 0.041 3.959 16 N -0.341 5.341 17 C -0.341 4.341 18 H 0.076 0.924 19 C -0.276 4.276 20 N -0.625 5.625 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.219 1.219 24 H -0.226 1.226 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.199 0.801 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.265 15.113 -12.385 20.519 hybrid contribution 0.308 -1.341 0.945 1.669 sum -5.957 13.772 -11.441 18.869 Atomic orbital electron populations 1.21703 0.93069 1.02052 1.02790 1.21170 0.97005 0.95648 1.00602 1.21640 0.90862 0.98782 1.04826 1.21347 0.91291 0.83958 0.78755 1.91111 1.68759 1.32802 1.45236 1.47981 1.05904 1.06527 1.74657 1.21930 0.97206 0.83386 0.99321 1.21944 0.95617 1.01107 0.98043 1.21515 0.95716 0.94506 1.02757 1.21509 1.00088 0.95909 0.93892 0.90283 1.21765 1.01491 0.99412 0.96658 1.21380 0.80713 0.95389 0.97892 0.92941 1.20908 0.93664 0.90570 0.90786 1.42344 1.53575 1.14259 1.23923 1.19495 1.18507 0.92892 1.03239 0.92359 1.25329 1.01766 1.01961 0.98496 1.69820 1.39564 1.38433 1.14672 0.85164 0.77056 0.80923 0.77317 1.19772 1.21901 1.22649 0.92913 0.92096 0.90534 0.93447 0.95680 0.86594 0.88837 0.88112 0.91541 0.91383 0.88235 0.89823 0.91632 0.90877 0.94904 0.92944 0.95437 0.97928 0.80134 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.11 -3.53 5.22 30.59 0.16 -3.37 16 3 C -0.12 -3.49 4.11 29.85 0.12 -3.37 16 4 C 0.46 17.51 6.96 87.66 0.61 18.12 16 5 O -0.51 -25.51 9.65 -3.00 -0.03 -25.54 16 6 N -0.61 -19.17 2.40 -794.23 -1.91 -21.08 16 7 C 0.10 2.08 6.32 86.36 0.55 2.63 16 8 C -0.13 -1.99 5.74 30.67 0.18 -1.81 16 9 C -0.11 -1.88 5.43 30.62 0.17 -1.71 16 10 C -0.09 -2.36 2.81 -10.57 -0.03 -2.39 16 11 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 12 C -0.14 -3.43 8.21 71.98 0.59 -2.84 16 13 C 0.15 5.19 2.68 45.12 0.12 5.31 16 14 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.17 7.66 4.16 86.38 0.36 8.02 16 16 N -0.70 -39.76 3.15 -343.45 -1.08 -40.84 16 17 C -0.21 -13.05 9.69 84.03 0.81 -12.23 16 18 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 19 C -0.08 -5.36 5.50 84.86 0.47 -4.89 16 20 N -0.97 -64.32 13.06 21.65 0.28 -64.04 16 21 Si 0.96 51.05 29.55 68.60 2.03 53.08 16 22 H -0.27 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.02 1.07 8.10 -2.38 -0.02 1.05 16 30 H 0.12 2.40 7.45 -2.39 -0.02 2.38 16 31 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 32 H 0.10 1.60 5.97 -2.39 -0.01 1.59 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.11 6.34 -2.38 -0.02 1.09 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.03 1.00 6.54 -2.38 -0.02 0.98 16 40 H 0.05 1.36 5.97 -2.39 -0.01 1.35 16 41 H 0.03 1.38 5.12 -2.38 -0.01 1.36 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.37 22.19 6.82 -92.71 -0.63 21.55 16 44 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -78.87 330.12 4.44 -74.42 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.33 Total: 25.13 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.82 Total: -1.14 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -2.71 Total: -125.96 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.03 Total: -25.54 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.03 Total: 53.08 kcal Total: -78.87 4.44 -74.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753802472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.335 kcal (2) G-P(sol) polarization free energy of solvation -78.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds