Wall clock time and date at job start Mon Mar 30 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50019 * 2 1 4 4 C 1.53117 * 109.50458 * 239.92248 * 2 1 3 5 5 C 1.53123 * 109.16210 * 182.36605 * 4 2 1 6 6 C 1.53042 * 109.27728 * 57.65195 * 5 4 2 7 7 N 1.46848 * 109.52370 * 300.82317 * 6 5 4 8 8 C 1.46894 * 110.99689 * 185.84168 * 7 6 5 9 9 C 1.52997 * 109.47515 * 66.04595 * 8 7 6 10 10 N 1.46505 * 109.47212 * 179.97438 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00162 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47023 * 90.00014 * 19 17 15 21 21 H 1.48502 * 109.47442 * 209.99974 * 19 17 15 22 22 H 1.48498 * 109.47139 * 330.00202 * 19 17 15 23 23 C 1.46840 * 111.19645 * 61.74073 * 7 6 5 24 24 H 1.08999 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47700 * 300.07912 * 1 2 3 26 26 H 1.09003 * 109.47124 * 60.08282 * 1 2 3 27 27 H 1.08998 * 109.52576 * 62.45702 * 4 2 1 28 28 H 1.09006 * 109.52298 * 302.27012 * 4 2 1 29 29 H 1.09003 * 109.50129 * 297.71637 * 5 4 2 30 30 H 1.08996 * 109.50098 * 177.59506 * 5 4 2 31 31 H 1.09003 * 109.45820 * 180.80706 * 6 5 4 32 32 H 1.08999 * 109.45104 * 60.83430 * 6 5 4 33 33 H 1.09002 * 109.47104 * 306.04327 * 8 7 6 34 34 H 1.08998 * 109.46828 * 186.05159 * 8 7 6 35 35 H 1.09002 * 109.47153 * 59.99762 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99953 * 9 8 7 37 37 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 38 38 H 1.09001 * 109.47380 * 300.00190 * 13 11 10 39 39 H 1.09002 * 109.47060 * 60.00278 * 13 11 10 40 40 H 1.09001 * 109.47289 * 299.99918 * 14 13 11 41 41 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 42 42 H 0.97006 * 119.99550 * 179.97438 * 18 17 15 43 43 H 1.09008 * 109.46446 * 58.27301 * 23 7 6 44 44 H 1.09002 * 109.46391 * 178.24165 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2490 5 6 3.5712 -0.7706 -1.2115 6 6 4.0238 -1.4716 0.0715 7 7 3.5100 -0.7411 1.2372 8 6 4.0387 -1.3047 2.4865 9 6 5.5501 -1.0751 2.5502 10 7 6.0772 -1.6367 3.7964 11 6 7.3941 -1.5515 4.0698 12 8 8.1428 -1.0096 3.2845 13 6 7.9363 -2.1287 5.3520 14 6 9.4476 -1.8992 5.4157 15 6 9.9900 -2.4769 6.6975 16 1 9.3232 -2.9591 7.3972 17 6 11.3371 -2.3889 6.9778 18 7 11.8102 -2.8926 8.0968 19 14 12.4901 -1.5543 5.7682 20 1 12.5821 -0.1074 6.0898 21 1 13.8384 -2.1693 5.8645 22 1 11.9667 -1.7224 4.3888 23 6 2.0418 -0.7233 1.2478 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5150 0.8892 26 1 -0.3633 0.5126 -0.8907 27 1 1.7151 -0.1867 -2.1399 28 1 1.6458 -1.7389 -1.2692 29 1 3.9673 0.2447 -1.2305 30 1 3.9395 -1.3218 -2.0767 31 1 5.1130 -1.4942 0.1081 32 1 3.6387 -2.4912 0.0832 33 1 3.8321 -2.3745 2.5186 34 1 3.5609 -0.8168 3.3360 35 1 5.7567 -0.0054 2.5181 36 1 6.0278 -1.5631 1.7006 37 1 5.4785 -2.0705 4.4243 38 1 7.4589 -1.6396 6.2012 39 1 7.7292 -3.1983 5.3852 40 1 9.9255 -2.3880 4.5666 41 1 9.6544 -0.8295 5.3827 42 1 12.7581 -2.8310 8.2937 43 1 1.6661 -1.7466 1.2541 44 1 1.6912 -0.2024 2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330907934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:34 Heat of formation + Delta-G solvation = -85.629771 kcal Electronic energy + Delta-G solvation = -20183.365157 eV Core-core repulsion = 17133.355475 eV Total energy + Delta-G solvation = -3050.009682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81525 -40.09240 -36.69454 -35.53194 -34.73975 -33.31416 -32.84098 -30.13909 -27.84435 -27.39198 -25.09443 -23.53809 -23.04388 -21.96184 -21.10797 -20.58505 -19.19929 -17.65448 -17.27775 -16.89219 -16.52447 -16.21959 -16.01533 -15.68005 -15.25712 -15.02101 -14.83089 -14.77046 -14.48973 -14.09243 -13.74678 -13.41023 -13.38956 -13.08717 -12.91595 -12.73690 -12.56216 -12.26792 -12.09153 -11.96475 -11.93741 -11.76556 -11.52573 -11.39838 -11.25769 -11.15601 -10.78535 -10.78029 -10.07553 -9.34278 -8.31525 -6.34230 1.33314 1.35113 1.50462 1.68886 2.11597 2.35147 3.02767 3.04117 3.74346 3.80094 3.91185 3.97837 4.05115 4.11726 4.23059 4.40565 4.40809 4.45095 4.50283 4.51903 4.62951 4.70747 4.77175 4.81798 4.88828 4.93659 4.94875 4.99058 5.03889 5.13075 5.22285 5.31623 5.32591 5.36907 5.45088 5.47341 5.53348 5.61466 6.05270 6.11060 6.23624 6.59059 6.72206 7.30961 7.31664 8.84031 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.050054 B = 0.002707 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.256705 B =10339.227465 C =10706.967627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.048 3.952 7 N -0.548 5.548 8 C 0.057 3.943 9 C 0.125 3.875 10 N -0.718 5.718 11 C 0.514 3.486 12 O -0.588 6.588 13 C -0.116 4.116 14 C 0.004 3.996 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C 0.063 3.937 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.037 0.963 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.377 3.612 -18.058 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.079 4.079 7 N -0.273 5.273 8 C -0.072 4.072 9 C 0.001 3.999 10 N -0.372 5.372 11 C 0.302 3.698 12 O -0.468 6.468 13 C -0.155 4.155 14 C -0.034 4.034 15 C -0.566 4.566 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.254 0.746 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.554 4.451 -18.562 31.896 hybrid contribution 0.538 -0.746 0.207 0.942 sum -25.016 3.705 -18.355 31.248 Atomic orbital electron populations 1.21760 0.93760 1.02126 1.02369 1.21163 0.95990 0.99722 0.93952 0.91279 1.21642 0.94814 1.00660 0.97984 1.21586 0.96488 1.01133 0.96268 1.22208 0.99821 0.95178 0.90732 1.61753 1.09124 1.54602 1.01813 1.22116 0.92706 0.98909 0.93432 1.21210 0.94141 0.98536 0.85989 1.45794 1.07905 1.60369 1.23116 1.21218 0.82146 0.78125 0.88285 1.90643 1.58998 1.45777 1.51368 1.21495 0.97036 1.02858 0.94154 1.19230 0.93096 0.95992 0.95103 1.21436 0.93765 1.37029 1.04404 0.93022 1.25810 1.00129 0.95803 0.96768 1.70026 1.14784 1.47697 1.25872 0.85830 0.78249 0.79223 0.80414 1.19384 1.20310 1.18670 1.22188 0.85612 0.99346 0.99331 0.92470 0.92179 0.91920 0.91017 0.91987 0.91939 0.90652 0.91493 0.94533 0.93083 0.88673 0.92585 0.92893 0.74598 0.87748 0.87802 0.97270 0.97377 0.92381 0.94505 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 71.98 0.66 -0.60 16 2 C -0.09 -1.07 2.88 -10.74 -0.03 -1.10 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.32 5.29 30.67 0.16 -1.16 16 5 C -0.12 -1.66 6.09 30.65 0.19 -1.47 16 6 C 0.05 0.80 5.29 86.33 0.46 1.26 16 7 N -0.55 -9.20 4.65 -896.38 -4.17 -13.38 16 8 C 0.06 0.92 5.07 86.30 0.44 1.35 16 9 C 0.13 2.93 5.61 86.38 0.48 3.41 16 10 N -0.72 -17.89 5.56 -463.06 -2.57 -20.46 16 11 C 0.51 18.43 7.83 87.66 0.69 19.11 16 12 O -0.59 -26.64 15.98 -3.03 -0.05 -26.69 16 13 C -0.12 -4.36 5.64 29.85 0.17 -4.19 16 14 C 0.00 0.19 3.33 29.85 0.10 0.29 16 15 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 16 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 17 C 0.01 0.75 5.47 84.65 0.46 1.21 16 18 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 19 Si 0.94 47.28 27.47 68.60 1.88 49.17 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.26 -13.19 6.54 99.48 0.65 -12.54 16 23 C 0.06 0.83 4.74 86.33 0.41 1.24 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.29 6.22 -2.39 -0.01 1.27 16 32 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.74 8.12 -2.39 -0.02 0.72 16 34 H 0.09 1.30 7.98 -2.39 -0.02 1.29 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.38 6.44 -2.39 -0.02 1.37 16 37 H 0.42 7.29 8.47 -92.71 -0.79 6.51 16 38 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.01 0.47 7.16 -2.39 -0.02 0.46 16 41 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 42 H 0.27 15.72 8.31 -92.70 -0.77 14.94 16 43 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.08 0.98 8.01 -2.39 -0.02 0.96 16 Total: -1.00 -72.83 346.56 -0.07 -72.90 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.11 Total: 8.59 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 4.43 Total: -11.07 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -6.45 Total: -92.90 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.17 kcal Total: -72.83 -0.07 -72.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.729 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds