Wall clock time and date at job start Mon Mar 30 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47113 * 2 1 4 4 C 1.46897 * 111.00120 * 169.99855 * 3 2 1 5 5 C 1.53241 * 109.34195 * 187.25457 * 4 3 2 6 6 H 1.08997 * 109.62975 * 65.87974 * 5 4 3 7 7 C 1.53004 * 109.62893 * 186.26703 * 5 4 3 8 8 N 1.47081 * 108.52122 * 306.16881 * 5 4 3 9 9 C 1.34773 * 120.88277 * 231.16386 * 8 5 4 10 10 O 1.21282 * 119.99934 * 166.26292 * 9 8 5 11 11 C 1.50700 * 119.99981 * 346.26258 * 9 8 5 12 12 C 1.52995 * 109.47045 * 183.83554 * 11 9 8 13 13 C 1.50700 * 109.47045 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00499 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47043 * 59.99902 * 17 15 13 19 19 H 1.48496 * 109.47410 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47207 * 300.00129 * 17 15 13 21 21 C 1.47082 * 118.23402 * 51.18554 * 8 5 4 22 22 H 1.08998 * 109.62867 * 68.72080 * 21 8 5 23 23 C 1.52998 * 109.62682 * 189.10408 * 21 8 5 24 24 C 1.46903 * 111.00072 * 294.30045 * 3 2 1 25 25 H 1.08995 * 109.47077 * 299.99656 * 1 2 3 26 26 H 1.09003 * 109.47095 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47521 * 239.99857 * 2 1 3 29 29 H 1.08998 * 109.47451 * 120.00309 * 2 1 3 30 30 H 1.08999 * 109.49580 * 67.29330 * 4 3 2 31 31 H 1.08999 * 109.49706 * 307.21479 * 4 3 2 32 32 H 1.09000 * 109.47291 * 61.85075 * 7 5 4 33 33 H 1.09000 * 109.46695 * 181.85381 * 7 5 4 34 34 H 1.09000 * 109.46614 * 301.85418 * 7 5 4 35 35 H 1.09001 * 109.47056 * 303.83242 * 11 9 8 36 36 H 1.08994 * 109.46997 * 63.83415 * 11 9 8 37 37 H 1.08994 * 109.47272 * 299.99966 * 12 11 9 38 38 H 1.09002 * 109.47390 * 60.00378 * 12 11 9 39 39 H 0.97007 * 120.00031 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46910 * 54.14059 * 23 21 8 41 41 H 1.09006 * 109.47220 * 174.13812 * 23 21 8 42 42 H 1.08994 * 109.47131 * 294.13874 * 23 21 8 43 43 H 1.08995 * 109.49087 * 52.78649 * 24 3 2 44 44 H 1.08993 * 109.51194 * 292.71734 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2382 5 6 3.9082 2.8889 0.4110 6 1 3.4673 3.2991 1.3195 7 6 5.4339 2.9580 0.5035 8 7 3.4446 3.6580 -0.7539 9 6 4.2946 4.4381 -1.4505 10 8 3.9722 4.8651 -2.5389 11 6 5.6456 4.7800 -0.8769 12 6 6.3684 5.7476 -1.8162 13 6 7.7196 6.0890 -1.2429 14 1 8.0316 5.6592 -0.3025 15 6 8.5573 6.9509 -1.9185 16 7 8.1773 7.4747 -3.0634 17 14 10.2320 7.3747 -1.2076 18 1 11.0357 6.1345 -1.0610 19 1 10.9336 8.3137 -2.1193 20 1 10.0583 8.0121 0.1224 21 6 2.0287 3.5534 -1.1380 22 1 1.4075 4.0305 -0.3801 23 6 1.8105 4.2397 -2.4879 24 6 1.6630 2.0695 -1.2499 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9910 0.9920 -0.6116 31 1 3.7067 0.8699 1.1417 32 1 5.8713 2.5841 -0.4222 33 1 5.7419 3.9919 0.6593 34 1 5.7751 2.3472 1.3393 35 1 5.5180 5.2483 0.0991 36 1 6.2354 3.8698 -0.7689 37 1 6.4959 5.2794 -2.7921 38 1 5.7786 6.6579 -1.9241 39 1 8.7668 8.0808 -3.5390 40 1 2.5024 3.8263 -3.2218 41 1 0.7858 4.0715 -2.8196 42 1 1.9877 5.3101 -2.3842 43 1 0.5918 1.9711 -1.4256 44 1 2.2103 1.6215 -2.0792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362280098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:24 Heat of formation + Delta-G solvation = 26.071721 kcal Electronic energy + Delta-G solvation = -21861.664711 eV Core-core repulsion = 18816.498770 eV Total energy + Delta-G solvation = -3045.165941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59206 -38.04515 -35.52813 -34.57197 -33.00075 -31.30376 -30.53690 -28.92142 -27.07056 -26.10950 -24.41972 -22.44207 -21.72350 -21.10462 -20.36594 -18.80785 -16.64633 -16.01929 -16.00105 -15.70592 -15.37150 -14.90289 -14.46566 -14.36459 -14.04845 -13.57480 -13.38371 -12.99927 -12.59682 -12.38829 -12.27943 -12.07362 -11.98084 -11.81820 -11.64682 -11.57885 -11.33688 -11.16617 -10.99689 -10.85284 -10.70708 -10.67633 -10.16875 -9.63950 -9.18463 -8.83964 -8.64772 -8.48294 -8.29631 -8.12530 -5.93799 -3.98062 3.23651 3.25754 3.35240 3.40222 3.41716 3.69270 4.48212 4.66170 4.73530 4.85221 4.93844 5.12227 5.19210 5.20195 5.21659 5.25193 5.41013 5.47753 5.50550 5.54966 5.61528 5.65171 5.69649 5.81131 5.90165 5.93279 5.97707 6.09981 6.17645 6.29755 6.35973 6.46052 6.64526 6.82600 6.84977 6.95571 7.02969 7.76811 7.88975 7.90713 8.10584 8.42059 8.83863 9.10963 9.65289 11.17131 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.004291 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.401702 B = 6523.486482 C = 7146.958166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.046 3.954 5 C 0.152 3.848 6 H 0.078 0.922 7 C -0.206 4.206 8 N -0.625 5.625 9 C 0.516 3.484 10 O -0.526 6.526 11 C -0.163 4.163 12 C 0.033 3.967 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.150 3.850 22 H 0.071 0.929 23 C -0.138 4.138 24 C 0.043 3.957 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 -14.773 8.270 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.083 4.083 5 C 0.048 3.952 6 H 0.096 0.904 7 C -0.263 4.263 8 N -0.363 5.363 9 C 0.307 3.693 10 O -0.402 6.402 11 C -0.201 4.201 12 C -0.005 4.005 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.046 3.954 22 H 0.089 0.911 23 C -0.196 4.196 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.969 -14.166 7.898 21.405 hybrid contribution 1.233 -0.289 -0.227 1.287 sum -12.735 -14.455 7.671 20.736 Atomic orbital electron populations 1.21808 0.94836 1.01445 1.02576 1.22063 0.96150 0.88807 1.00688 1.61967 1.13779 1.15487 1.35222 1.22578 0.87433 0.97143 1.01167 1.21121 0.95287 0.89892 0.88915 0.90449 1.23727 0.93417 1.06990 1.02134 1.48488 1.09049 1.47657 1.31059 1.21480 0.86916 0.76338 0.84564 1.90685 1.76335 1.53083 1.20062 1.23372 0.92106 1.03845 1.00809 1.18991 0.93817 0.93553 0.94115 1.21186 1.01062 1.27439 1.06733 0.92689 1.25024 0.98305 0.96103 0.94935 1.69989 1.36790 1.31206 1.14881 0.86677 0.84262 0.78243 0.78887 1.20268 1.21346 1.20257 1.21231 0.82158 0.94143 0.97835 0.91081 1.22192 0.99590 1.02047 0.95729 1.22647 1.01112 0.94676 0.90147 0.91772 0.92614 0.92385 0.95058 0.90771 0.94329 0.89789 0.90950 0.86436 0.91987 0.89848 0.86768 0.95930 0.96310 0.92954 0.90338 0.94274 0.91073 0.89744 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.84 37.16 0.37 -0.76 16 2 C 0.05 0.45 5.68 -3.83 -0.02 0.42 16 3 N -0.54 -5.88 4.63 -234.32 -1.08 -6.96 16 4 C 0.05 0.50 4.91 -3.70 -0.02 0.48 16 5 C 0.15 1.91 3.62 -67.49 -0.24 1.66 16 6 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.21 -2.56 7.08 37.16 0.26 -2.29 16 8 N -0.62 -9.74 3.01 -157.44 -0.47 -10.21 16 9 C 0.52 10.15 7.32 -10.99 -0.08 10.07 16 10 O -0.53 -12.11 11.58 5.56 0.06 -12.05 16 11 C -0.16 -3.29 3.23 -27.89 -0.09 -3.38 16 12 C 0.03 0.88 4.27 -27.89 -0.12 0.76 16 13 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.15 2.10 3.65 -67.49 -0.25 1.85 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 C -0.14 -2.12 7.62 37.16 0.28 -1.84 16 24 C 0.04 0.51 4.75 -3.70 -0.02 0.49 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.43 6.40 -51.93 -0.33 0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 29 H 0.07 0.58 7.97 -51.93 -0.41 0.17 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 32 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 33 H 0.12 1.64 3.94 -65.34 -0.26 1.39 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.57 6.63 -51.93 -0.34 1.22 16 36 H 0.11 2.10 4.09 -57.97 -0.24 1.86 16 37 H 0.02 0.66 8.06 -51.93 -0.42 0.25 16 38 H 0.02 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 1.40 6.56 -51.93 -0.34 1.06 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.26 7.02 -51.93 -0.36 0.89 16 43 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -32.45 328.56 -8.71 -41.16 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.54 Total: -0.65 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.34 Total: -6.06 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.82 Total: -43.96 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.45 -8.71 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362280098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.229 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds