Wall clock time and date at job start Mon Mar 30 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47113 * 2 1 4 4 C 1.46897 * 111.00120 * 169.99855 * 3 2 1 5 5 C 1.53241 * 109.34195 * 187.25457 * 4 3 2 6 6 H 1.08997 * 109.62975 * 65.87974 * 5 4 3 7 7 C 1.53004 * 109.62893 * 186.26703 * 5 4 3 8 8 N 1.47081 * 108.52122 * 306.16881 * 5 4 3 9 9 C 1.34773 * 120.88277 * 231.16386 * 8 5 4 10 10 O 1.21282 * 119.99934 * 166.26292 * 9 8 5 11 11 C 1.50700 * 119.99981 * 346.26258 * 9 8 5 12 12 C 1.52995 * 109.47045 * 183.83554 * 11 9 8 13 13 C 1.50700 * 109.47045 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00499 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99879 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47043 * 59.99902 * 17 15 13 19 19 H 1.48496 * 109.47410 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47207 * 300.00129 * 17 15 13 21 21 C 1.47082 * 118.23402 * 51.18554 * 8 5 4 22 22 H 1.08998 * 109.62867 * 68.72080 * 21 8 5 23 23 C 1.52998 * 109.62682 * 189.10408 * 21 8 5 24 24 C 1.46903 * 111.00072 * 294.30045 * 3 2 1 25 25 H 1.08995 * 109.47077 * 299.99656 * 1 2 3 26 26 H 1.09003 * 109.47095 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47521 * 239.99857 * 2 1 3 29 29 H 1.08998 * 109.47451 * 120.00309 * 2 1 3 30 30 H 1.08999 * 109.49580 * 67.29330 * 4 3 2 31 31 H 1.08999 * 109.49706 * 307.21479 * 4 3 2 32 32 H 1.09000 * 109.47291 * 61.85075 * 7 5 4 33 33 H 1.09000 * 109.46695 * 181.85381 * 7 5 4 34 34 H 1.09000 * 109.46614 * 301.85418 * 7 5 4 35 35 H 1.09001 * 109.47056 * 303.83242 * 11 9 8 36 36 H 1.08994 * 109.46997 * 63.83415 * 11 9 8 37 37 H 1.08994 * 109.47272 * 299.99966 * 12 11 9 38 38 H 1.09002 * 109.47390 * 60.00378 * 12 11 9 39 39 H 0.97007 * 120.00031 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46910 * 54.14059 * 23 21 8 41 41 H 1.09006 * 109.47220 * 174.13812 * 23 21 8 42 42 H 1.08994 * 109.47131 * 294.13874 * 23 21 8 43 43 H 1.08995 * 109.49087 * 52.78649 * 24 3 2 44 44 H 1.08993 * 109.51194 * 292.71734 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2382 5 6 3.9082 2.8889 0.4110 6 1 3.4673 3.2991 1.3195 7 6 5.4339 2.9580 0.5035 8 7 3.4446 3.6580 -0.7539 9 6 4.2946 4.4381 -1.4505 10 8 3.9722 4.8651 -2.5389 11 6 5.6456 4.7800 -0.8769 12 6 6.3684 5.7476 -1.8162 13 6 7.7196 6.0890 -1.2429 14 1 8.0316 5.6592 -0.3025 15 6 8.5573 6.9509 -1.9185 16 7 8.1773 7.4747 -3.0634 17 14 10.2320 7.3747 -1.2076 18 1 11.0357 6.1345 -1.0610 19 1 10.9336 8.3137 -2.1193 20 1 10.0583 8.0121 0.1224 21 6 2.0287 3.5534 -1.1380 22 1 1.4075 4.0305 -0.3801 23 6 1.8105 4.2397 -2.4879 24 6 1.6630 2.0695 -1.2499 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9910 0.9920 -0.6116 31 1 3.7067 0.8699 1.1417 32 1 5.8713 2.5841 -0.4222 33 1 5.7419 3.9919 0.6593 34 1 5.7751 2.3472 1.3393 35 1 5.5180 5.2483 0.0991 36 1 6.2354 3.8698 -0.7689 37 1 6.4959 5.2794 -2.7921 38 1 5.7786 6.6579 -1.9241 39 1 8.7668 8.0808 -3.5390 40 1 2.5024 3.8263 -3.2218 41 1 0.7858 4.0715 -2.8196 42 1 1.9877 5.3101 -2.3842 43 1 0.5918 1.9711 -1.4256 44 1 2.2103 1.6215 -2.0792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362280098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:24 Heat of formation + Delta-G solvation = 3.962758 kcal Electronic energy + Delta-G solvation = -21862.623428 eV Core-core repulsion = 18816.498770 eV Total energy + Delta-G solvation = -3046.124658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88697 -39.22095 -36.79801 -35.99443 -34.82646 -32.76796 -31.72491 -30.08748 -28.57027 -27.36838 -25.87056 -23.80268 -22.89820 -22.04820 -21.84322 -20.16537 -18.50684 -17.54381 -17.21359 -16.72042 -16.58024 -16.36222 -16.04525 -15.40680 -15.22370 -15.02942 -14.57872 -14.20964 -14.08397 -13.93211 -13.53959 -13.40508 -13.15336 -13.04662 -12.79978 -12.69757 -12.62956 -12.50767 -12.34510 -12.25969 -12.05531 -11.90122 -11.64547 -11.34038 -11.28795 -10.57891 -10.45147 -10.03461 -9.67348 -9.26149 -8.16099 -6.30099 1.42491 1.47252 1.54729 1.70418 2.00841 2.44178 2.82598 3.16736 3.60348 3.79318 3.88517 4.03618 4.14893 4.17318 4.21618 4.30094 4.39116 4.45594 4.49482 4.59463 4.63027 4.64547 4.70422 4.74383 4.79973 4.96917 5.00913 5.04870 5.09965 5.12903 5.18100 5.32453 5.38167 5.39539 5.51809 5.65638 5.72010 5.87201 5.99467 6.06395 6.20396 6.50949 6.89137 7.33845 7.40365 8.96533 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.004291 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.401702 B = 6523.486482 C = 7146.958166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.542 5.542 4 C 0.049 3.951 5 C 0.146 3.854 6 H 0.095 0.905 7 C -0.203 4.203 8 N -0.617 5.617 9 C 0.511 3.489 10 O -0.574 6.574 11 C -0.149 4.149 12 C 0.040 3.960 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.940 5.940 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.261 1.261 21 C 0.146 3.854 22 H 0.085 0.915 23 C -0.129 4.129 24 C 0.052 3.948 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.140 0.860 37 H -0.022 1.022 38 H -0.027 1.027 39 H 0.262 0.738 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.105 0.895 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 -16.883 11.407 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.079 4.079 5 C 0.043 3.957 6 H 0.112 0.888 7 C -0.259 4.259 8 N -0.353 5.353 9 C 0.302 3.698 10 O -0.453 6.453 11 C -0.187 4.187 12 C 0.002 3.998 13 C -0.578 4.578 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.580 5.580 17 Si 0.797 3.203 18 H -0.185 1.185 19 H -0.216 1.216 20 H -0.186 1.186 21 C 0.043 3.957 22 H 0.103 0.897 23 C -0.187 4.187 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.157 0.843 37 H -0.004 1.004 38 H -0.008 1.008 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.123 0.877 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.065 -16.327 11.093 24.237 hybrid contribution 1.166 0.321 -1.196 1.701 sum -12.899 -16.006 9.897 22.815 Atomic orbital electron populations 1.21787 0.93837 1.02398 1.02300 1.22164 0.96956 0.87409 1.01238 1.62011 1.13627 1.16856 1.34102 1.22581 0.87458 0.95858 1.02044 1.21442 0.95578 0.90688 0.87981 0.88755 1.23528 0.93203 1.06478 1.02733 1.48521 1.09273 1.46340 1.31165 1.21372 0.87279 0.76851 0.84302 1.90689 1.77248 1.55257 1.22124 1.23404 0.92499 1.03167 0.99635 1.18809 0.94266 0.92915 0.93798 1.21691 1.01339 1.27265 1.07460 0.90358 1.26158 1.03306 0.95925 0.95164 1.70186 1.38731 1.32205 1.16860 0.85381 0.78227 0.78406 0.78278 1.18536 1.21568 1.18605 1.21391 0.81235 0.95951 0.97127 0.89664 1.21988 1.00542 0.99962 0.96167 1.22513 1.02077 0.92760 0.90292 0.91846 0.93014 0.90910 0.95469 0.89219 0.95646 0.86817 0.92524 0.88071 0.88396 0.87813 0.84315 1.00351 1.00815 0.92982 0.93421 0.91158 0.94170 0.87692 0.96128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.84 71.98 0.71 -1.03 16 2 C 0.05 0.71 5.68 86.30 0.49 1.20 16 3 N -0.54 -10.17 4.63 -895.27 -4.14 -14.31 16 4 C 0.05 0.93 4.91 86.38 0.42 1.35 16 5 C 0.15 3.29 3.62 44.96 0.16 3.45 16 6 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 7 C -0.20 -4.51 7.08 71.98 0.51 -4.00 16 8 N -0.62 -18.97 3.01 -770.42 -2.32 -21.29 16 9 C 0.51 20.89 7.32 87.66 0.64 21.53 16 10 O -0.57 -28.46 11.58 -3.04 -0.04 -28.50 16 11 C -0.15 -6.15 3.23 29.85 0.10 -6.05 16 12 C 0.04 2.26 4.27 29.85 0.13 2.38 16 13 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 16 N -0.94 -60.48 13.29 21.45 0.28 -60.20 16 17 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C 0.15 3.98 3.65 44.96 0.16 4.14 16 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 23 C -0.13 -4.10 7.62 71.98 0.55 -3.55 16 24 C 0.05 1.15 4.75 86.38 0.41 1.56 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.66 6.40 -2.39 -0.02 0.64 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 29 H 0.09 1.04 7.97 -2.39 -0.02 1.02 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 1.53 7.99 -2.39 -0.02 1.51 16 32 H 0.06 1.46 6.38 -2.39 -0.02 1.45 16 33 H 0.10 2.61 3.94 -14.98 -0.06 2.55 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 3.85 6.63 -2.39 -0.02 3.83 16 36 H 0.14 5.06 4.09 -8.06 -0.03 5.03 16 37 H -0.02 -1.42 8.06 -2.39 -0.02 -1.44 16 38 H -0.03 -1.72 8.13 -2.39 -0.02 -1.74 16 39 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 40 H 0.05 1.80 6.56 -2.39 -0.02 1.79 16 41 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 1.50 7.02 -2.39 -0.02 1.49 16 43 H 0.11 1.89 6.16 -2.39 -0.01 1.87 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -75.56 328.56 1.68 -73.88 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.89 Total: 13.60 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.98 Total: -9.67 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -6.18 Total: -95.80 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.04 Total: -28.50 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.56 1.68 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362280098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.840 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds