Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 116.99885 * 2 1 4 4 C 1.38652 * 120.14542 * 0.22646 * 3 2 1 5 5 C 1.38117 * 120.12549 * 180.28047 * 4 3 2 6 6 C 1.38491 * 120.42183 * 359.76825 * 5 4 3 7 7 C 1.37945 * 120.29292 * 359.97438 * 6 5 4 8 8 Cl 1.73600 * 120.06728 * 179.97438 * 7 6 5 9 9 C 1.39900 * 119.86554 * 0.02562 * 7 6 5 10 10 C 1.47360 * 120.20743 * 179.97438 * 9 7 6 11 11 O 1.21636 * 119.99776 * 90.00077 * 10 9 7 12 12 N 1.34770 * 120.00103 * 270.00128 * 10 9 7 13 13 C 1.46498 * 120.00374 * 359.72748 * 12 10 9 14 14 C 1.36915 * 120.00098 * 179.97438 * 12 10 9 15 15 H 1.08005 * 119.99735 * 338.15175 * 14 12 10 16 16 C 1.39014 * 120.00137 * 158.14866 * 14 12 10 17 17 N 1.31386 * 120.00007 * 344.34289 * 16 14 12 18 18 Si 1.86800 * 119.99950 * 164.34649 * 16 14 12 19 19 H 1.48504 * 109.47599 * 59.99770 * 18 16 14 20 20 H 1.48500 * 109.47306 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47091 * 299.99593 * 18 16 14 22 22 H 1.09005 * 109.47347 * 60.00493 * 1 2 3 23 23 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47331 * 300.00080 * 1 2 3 25 25 H 1.08005 * 119.93826 * 0.02847 * 4 3 2 26 26 H 1.08000 * 119.78553 * 179.74685 * 5 4 3 27 27 H 1.08000 * 119.85132 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47052 * 271.99194 * 13 12 10 29 29 H 1.09006 * 109.46863 * 31.98170 * 13 12 10 30 30 H 1.08991 * 109.47520 * 151.98315 * 13 12 10 31 31 H 0.97005 * 119.99945 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2926 2.3735 0.0047 5 6 1.9200 3.6040 -0.0011 6 6 3.3025 3.6862 -0.0069 7 6 4.0678 2.5385 -0.0064 8 17 5.8003 2.6484 -0.0143 9 6 3.4450 1.2858 -0.0005 10 6 4.2552 0.0549 -0.0004 11 8 4.5938 -0.4502 1.0530 12 7 4.6210 -0.5111 -1.1675 13 6 4.2082 0.0939 -2.4363 14 6 5.3743 -1.6544 -1.1675 15 1 5.9656 -1.9114 -0.3010 16 6 5.3778 -2.4845 -2.2825 17 7 4.4475 -2.3545 -3.2012 18 14 6.7051 -3.7848 -2.4747 19 1 6.6463 -4.7257 -1.3273 20 1 6.4870 -4.5317 -3.7396 21 1 8.0377 -3.1304 -2.5105 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2140 2.3185 0.0089 26 1 1.3287 4.5077 -0.0015 27 1 3.7835 4.6531 -0.0119 28 1 3.2333 -0.2984 -2.7256 29 1 4.1442 1.1758 -2.3190 30 1 4.9398 -0.1452 -3.2079 31 1 4.4498 -2.9340 -3.9791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336430350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = -36.513400 kcal Electronic energy + Delta-G solvation = -18730.701173 eV Core-core repulsion = 15618.312556 eV Total energy + Delta-G solvation = -3112.388617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12060 -38.06825 -37.15603 -35.90357 -34.53812 -31.72845 -30.65919 -29.86891 -27.19085 -26.21726 -24.77964 -22.87094 -21.94282 -19.57668 -17.87179 -16.84494 -16.30286 -16.21780 -15.54174 -15.09748 -14.86402 -14.30278 -14.02432 -13.92816 -13.22955 -13.01784 -12.62886 -12.11956 -11.82643 -11.60777 -11.49722 -11.29105 -11.15344 -11.03118 -10.79021 -10.67461 -10.58510 -10.36037 -10.21058 -8.96313 -8.63506 -8.35214 -7.98809 -7.60196 -6.27042 -3.78460 1.25514 1.49038 2.36710 3.22982 3.28364 3.33125 3.54333 3.73523 3.87490 4.19576 4.74819 4.92028 5.09192 5.16487 5.27462 5.30132 5.37066 5.47500 5.60568 5.63018 5.96902 6.30704 6.34854 6.41547 6.46279 6.67528 6.94556 7.26683 7.57033 7.63124 8.18508 8.55400 9.23918 9.48292 10.05264 10.77684 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.007750 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.354828 B = 3611.907672 C = 4430.908742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.293 6.293 3 C 0.166 3.834 4 C -0.212 4.212 5 C -0.070 4.070 6 C -0.156 4.156 7 C 0.021 3.979 8 Cl -0.051 7.051 9 C -0.111 4.111 10 C 0.496 3.504 11 O -0.577 6.577 12 N -0.425 5.425 13 C 0.117 3.883 14 C -0.304 4.304 15 H 0.100 0.900 16 C 0.032 3.968 17 N -0.877 5.877 18 Si 0.925 3.075 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.053 0.947 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 11.126 1.110 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.118 3.882 4 C -0.231 4.231 5 C -0.089 4.089 6 C -0.175 4.175 7 C -0.007 4.007 8 Cl -0.022 7.022 9 C -0.115 4.115 10 C 0.282 3.718 11 O -0.462 6.462 12 N -0.142 5.142 13 C -0.027 4.027 14 C -0.432 4.432 15 H 0.117 0.883 16 C -0.172 4.172 17 N -0.516 5.516 18 Si 0.752 3.248 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.199 1.199 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.074 10.554 1.396 12.782 hybrid contribution 0.308 -0.449 -0.359 0.652 sum -6.766 10.106 1.037 12.206 Atomic orbital electron populations 1.23093 0.78585 1.04196 1.00873 1.86252 1.20975 1.25812 1.87402 1.18847 0.90502 0.84814 0.94009 1.21209 1.00145 0.92033 1.09711 1.20814 0.93590 0.97080 0.97388 1.20805 0.93611 0.97030 1.06013 1.20702 0.85443 0.93040 1.01479 1.98383 1.08995 1.98317 1.96499 1.19482 0.91484 0.94762 1.05813 1.17344 0.84178 0.85190 0.85045 1.90627 1.59195 1.65327 1.31059 1.43385 1.44511 1.22736 1.03590 1.21419 1.01439 0.92686 0.87187 1.19605 1.21739 0.99034 1.02816 0.88251 1.25323 0.97347 0.98064 0.96448 1.70024 1.30817 1.39344 1.11407 0.86019 0.80943 0.80280 0.77585 1.19749 1.20983 1.19888 0.92639 0.88091 0.92808 0.84882 0.85026 0.84853 0.92909 0.95899 0.90868 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.29 -5.76 9.95 -18.70 -0.19 -5.94 16 3 C 0.17 3.15 6.70 -38.68 -0.26 2.89 16 4 C -0.21 -3.00 9.03 -39.47 -0.36 -3.36 16 5 C -0.07 -0.88 10.03 -39.53 -0.40 -1.28 16 6 C -0.16 -2.24 9.81 -39.60 -0.39 -2.63 16 7 C 0.02 0.39 5.92 -39.07 -0.23 0.16 16 8 Cl -0.05 -0.96 28.04 -51.86 -1.45 -2.41 16 9 C -0.11 -2.41 3.95 -104.82 -0.41 -2.82 16 10 C 0.50 13.25 5.65 -12.55 -0.07 13.18 16 11 O -0.58 -17.49 16.79 5.25 0.09 -17.40 16 12 N -0.43 -11.62 3.01 -123.45 -0.37 -12.00 16 13 C 0.12 2.83 8.50 59.85 0.51 3.34 16 14 C -0.30 -8.84 9.28 -14.99 -0.14 -8.97 16 15 H 0.10 3.01 7.41 -52.48 -0.39 2.62 16 16 C 0.03 0.86 5.00 -17.45 -0.09 0.78 16 17 N -0.88 -23.98 10.82 55.50 0.60 -23.38 16 18 Si 0.93 21.26 29.58 -169.99 -5.03 16.23 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 23 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 25 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 26 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.05 1.32 7.75 -51.93 -0.40 0.92 16 29 H 0.02 0.49 6.62 -51.93 -0.34 0.14 16 30 H 0.07 1.83 6.85 -51.93 -0.36 1.47 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 286.02 15.07 4.31 4.31 Total: -1.00 -33.93 286.02 -5.91 -39.84 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -3.02 Total: -1.87 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.84 Total: 2.63 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.23 Total: -35.37 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.10 Total: -23.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.45 Total: -2.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.93 -5.91 -39.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336430350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.323 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds