Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 116.99885 * 2 1 4 4 C 1.38652 * 120.14542 * 0.22646 * 3 2 1 5 5 C 1.38117 * 120.12549 * 180.28047 * 4 3 2 6 6 C 1.38491 * 120.42183 * 359.76825 * 5 4 3 7 7 C 1.37945 * 120.29292 * 359.97438 * 6 5 4 8 8 Cl 1.73600 * 120.06728 * 179.97438 * 7 6 5 9 9 C 1.39900 * 119.86554 * 0.02562 * 7 6 5 10 10 C 1.47360 * 120.20743 * 179.97438 * 9 7 6 11 11 O 1.21636 * 119.99776 * 90.00077 * 10 9 7 12 12 N 1.34770 * 120.00103 * 270.00128 * 10 9 7 13 13 C 1.46498 * 120.00374 * 359.72748 * 12 10 9 14 14 C 1.36915 * 120.00098 * 179.97438 * 12 10 9 15 15 H 1.08005 * 119.99735 * 338.15175 * 14 12 10 16 16 C 1.39014 * 120.00137 * 158.14866 * 14 12 10 17 17 N 1.31386 * 120.00007 * 344.34289 * 16 14 12 18 18 Si 1.86800 * 119.99950 * 164.34649 * 16 14 12 19 19 H 1.48504 * 109.47599 * 59.99770 * 18 16 14 20 20 H 1.48500 * 109.47306 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47091 * 299.99593 * 18 16 14 22 22 H 1.09005 * 109.47347 * 60.00493 * 1 2 3 23 23 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47331 * 300.00080 * 1 2 3 25 25 H 1.08005 * 119.93826 * 0.02847 * 4 3 2 26 26 H 1.08000 * 119.78553 * 179.74685 * 5 4 3 27 27 H 1.08000 * 119.85132 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47052 * 271.99194 * 13 12 10 29 29 H 1.09006 * 109.46863 * 31.98170 * 13 12 10 30 30 H 1.08991 * 109.47520 * 151.98315 * 13 12 10 31 31 H 0.97005 * 119.99945 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2926 2.3735 0.0047 5 6 1.9200 3.6040 -0.0011 6 6 3.3025 3.6862 -0.0069 7 6 4.0678 2.5385 -0.0064 8 17 5.8003 2.6484 -0.0143 9 6 3.4450 1.2858 -0.0005 10 6 4.2552 0.0549 -0.0004 11 8 4.5938 -0.4502 1.0530 12 7 4.6210 -0.5111 -1.1675 13 6 4.2082 0.0939 -2.4363 14 6 5.3743 -1.6544 -1.1675 15 1 5.9656 -1.9114 -0.3010 16 6 5.3778 -2.4845 -2.2825 17 7 4.4475 -2.3545 -3.2012 18 14 6.7051 -3.7848 -2.4747 19 1 6.6463 -4.7257 -1.3273 20 1 6.4870 -4.5317 -3.7396 21 1 8.0377 -3.1304 -2.5105 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2140 2.3185 0.0089 26 1 1.3287 4.5077 -0.0015 27 1 3.7835 4.6531 -0.0119 28 1 3.2333 -0.2984 -2.7256 29 1 4.1442 1.1758 -2.3190 30 1 4.9398 -0.1452 -3.2079 31 1 4.4498 -2.9340 -3.9791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336430350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = -59.901315 kcal Electronic energy + Delta-G solvation = -18731.715349 eV Core-core repulsion = 15618.312556 eV Total energy + Delta-G solvation = -3113.402793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.50900 -39.86209 -38.53987 -37.24548 -36.65789 -33.74740 -32.12710 -31.07403 -28.40513 -28.11316 -26.69780 -24.42147 -23.15575 -21.28299 -19.26613 -18.88041 -18.04399 -17.56414 -16.95842 -16.69206 -16.20546 -16.04375 -15.60881 -15.53532 -14.78327 -14.50800 -14.21605 -13.67633 -13.34662 -13.27831 -13.17655 -12.78425 -12.76585 -12.66662 -12.40836 -12.23349 -12.14662 -11.97547 -11.82359 -11.04937 -10.53820 -9.81505 -9.72181 -9.27571 -8.37247 -5.98857 -0.00947 0.26903 1.02617 1.36747 1.38944 1.50447 1.93506 2.26538 2.38547 2.53569 3.04425 3.05442 3.77619 3.95437 4.08611 4.19820 4.34259 4.37718 4.39800 4.49485 4.59675 4.70860 4.91801 5.13189 5.16390 5.24315 5.28093 5.42621 5.60507 6.04627 6.39479 6.45557 7.12117 7.40835 7.99215 8.66601 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.007750 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.354828 B = 3611.907672 C = 4430.908742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.147 3.853 4 C -0.197 4.197 5 C -0.044 4.044 6 C -0.146 4.146 7 C 0.005 3.995 8 Cl -0.069 7.069 9 C -0.162 4.162 10 C 0.495 3.505 11 O -0.633 6.633 12 N -0.439 5.439 13 C 0.137 3.863 14 C -0.349 4.349 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.891 5.891 18 Si 0.991 3.009 19 H -0.276 1.276 20 H -0.265 1.265 21 H -0.267 1.267 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.175 0.825 26 H 0.190 0.810 27 H 0.168 0.832 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 13.404 0.286 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.100 3.900 4 C -0.215 4.215 5 C -0.061 4.061 6 C -0.164 4.164 7 C -0.022 4.022 8 Cl -0.040 7.040 9 C -0.167 4.167 10 C 0.284 3.716 11 O -0.522 6.522 12 N -0.155 5.155 13 C -0.007 4.007 14 C -0.477 4.477 15 H 0.089 0.911 16 C -0.202 4.202 17 N -0.529 5.529 18 Si 0.813 3.187 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.192 1.192 22 H 0.097 0.903 23 H 0.123 0.877 24 H 0.098 0.902 25 H 0.192 0.808 26 H 0.207 0.793 27 H 0.185 0.815 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.077 12.856 0.538 15.747 hybrid contribution 0.770 -1.086 -0.082 1.334 sum -8.307 11.770 0.456 14.413 Atomic orbital electron populations 1.23443 0.75530 1.05438 1.03211 1.86175 1.24411 1.27286 1.87774 1.19119 0.89777 0.86251 0.94821 1.21683 1.01904 0.90662 1.07301 1.21513 0.92973 0.98462 0.93193 1.21283 0.94464 0.96708 1.03966 1.20949 0.84917 0.93449 1.02920 1.98369 1.10671 1.98291 1.96681 1.19245 0.92605 0.93350 1.11497 1.18106 0.83253 0.86354 0.83850 1.90548 1.61299 1.67524 1.32801 1.43598 1.44549 1.22577 1.04822 1.21217 0.99928 0.93851 0.85667 1.19576 1.23773 1.01165 1.03158 0.91136 1.26123 0.99082 0.99597 0.95374 1.70086 1.31369 1.39888 1.11524 0.85056 0.78198 0.77472 0.77941 1.20102 1.18926 1.19178 0.90280 0.87726 0.90195 0.80804 0.79301 0.81461 0.94205 0.93420 0.92181 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.34 -13.58 9.95 -89.81 -0.89 -14.48 16 3 C 0.15 5.46 6.70 22.85 0.15 5.61 16 4 C -0.20 -4.70 9.03 22.34 0.20 -4.50 16 5 C -0.04 -0.84 10.03 22.30 0.22 -0.61 16 6 C -0.15 -3.61 9.81 22.26 0.22 -3.39 16 7 C 0.01 0.19 5.92 22.60 0.13 0.32 16 8 Cl -0.07 -2.63 28.04 -2.72 -0.08 -2.71 16 9 C -0.16 -7.17 3.95 -19.99 -0.08 -7.25 16 10 C 0.50 27.91 5.65 86.65 0.49 28.40 16 11 O -0.63 -41.12 16.79 -4.15 -0.07 -41.19 16 12 N -0.44 -25.23 3.01 -662.73 -2.00 -27.23 16 13 C 0.14 6.85 8.50 127.77 1.09 7.93 16 14 C -0.35 -21.41 9.28 84.09 0.78 -20.63 16 15 H 0.07 4.61 7.41 -2.91 -0.02 4.59 16 16 C 0.00 0.04 5.00 84.95 0.42 0.46 16 17 N -0.89 -49.43 10.82 21.67 0.23 -49.19 16 18 Si 0.99 44.33 29.58 68.60 2.03 46.36 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H 0.08 1.46 7.67 -2.38 -0.02 1.44 16 23 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.08 1.43 7.65 -2.39 -0.02 1.42 16 25 H 0.17 2.67 6.30 -2.91 -0.02 2.65 16 26 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 27 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 28 H 0.04 2.05 7.75 -2.39 -0.02 2.03 16 29 H 0.05 2.10 6.62 -2.38 -0.02 2.08 16 30 H 0.06 3.09 6.85 -2.39 -0.02 3.07 16 31 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -81.07 286.02 5.13 -75.94 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.16 Total: 4.63 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.74 Total: 7.86 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.76 Total: -76.42 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.96 Total: -55.66 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -81.07 5.13 -75.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336430350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.036 kcal (2) G-P(sol) polarization free energy of solvation -81.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds