Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47019 * 137.80539 * 3 2 1 5 5 C 1.36936 * 119.99766 * 273.21762 * 4 3 2 6 6 H 1.08005 * 120.00204 * 186.70241 * 5 4 3 7 7 C 1.38814 * 120.00104 * 6.70622 * 5 4 3 8 8 N 1.31615 * 119.99836 * 25.21715 * 7 5 4 9 9 Si 1.86801 * 119.99997 * 205.22020 * 7 5 4 10 10 H 1.48496 * 109.47361 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47118 * 119.99927 * 9 7 5 12 12 H 1.48501 * 109.47176 * 239.99490 * 9 7 5 13 13 S 1.65600 * 120.00445 * 93.22212 * 4 3 2 14 14 O 1.42096 * 106.40384 * 156.46161 * 13 4 3 15 15 O 1.42096 * 106.40138 * 23.53771 * 13 4 3 16 16 C 1.76207 * 107.21478 * 269.99863 * 13 4 3 17 17 C 1.39870 * 125.89799 * 150.01420 * 16 13 4 18 18 C 1.35312 * 107.92029 * 179.97438 * 17 16 13 19 19 N 1.34945 * 107.74529 * 359.97438 * 18 17 16 20 20 C 1.46498 * 126.03454 * 180.02562 * 19 18 17 21 21 N 1.30836 * 125.89850 * 329.97169 * 16 13 4 22 22 H 4.40638 * 5.51428 * 180.02562 * 4 1 2 23 23 H 1.08994 * 109.47436 * 17.80256 * 3 2 1 24 24 H 1.09002 * 109.46788 * 257.79683 * 3 2 1 25 25 H 0.97003 * 119.99794 * 179.97438 * 8 7 5 26 26 H 1.08000 * 126.03653 * 359.97438 * 17 16 13 27 27 H 1.08001 * 126.12772 * 180.02562 * 18 17 16 28 28 H 1.09008 * 109.47005 * 270.02703 * 20 19 18 29 29 H 1.09000 * 109.47664 * 30.02036 * 20 19 18 30 30 H 1.09003 * 109.47467 * 150.02859 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0242 -0.9277 5 6 3.2994 0.7236 -2.2534 6 1 3.7598 1.4412 -2.9164 7 6 2.8754 -0.5033 -2.7451 8 7 1.9124 -1.1600 -2.1339 9 14 3.6718 -1.2223 -4.2743 10 1 4.7216 -0.2954 -4.7681 11 1 4.2857 -2.5333 -3.9428 12 1 2.6415 -1.4104 -5.3271 13 16 3.4852 2.5445 -0.3733 14 8 4.4103 3.1041 -1.2953 15 8 3.7554 2.4127 1.0155 16 6 2.0113 3.5011 -0.5048 17 6 1.6492 4.5679 0.3242 18 6 0.4534 5.0379 -0.1004 19 7 0.0727 4.2953 -1.1608 20 6 -1.1625 4.4620 -1.9308 21 7 1.0669 3.3367 -1.3953 22 1 -1.0502 -0.0001 0.0003 23 1 3.0098 -0.9776 -0.3142 24 1 3.0092 0.2181 1.0045 25 1 1.6159 -2.0172 -2.4778 26 1 2.2227 4.9491 1.1562 27 1 -0.0971 5.8606 0.3314 28 1 -1.9502 3.8502 -1.4909 29 1 -1.4634 5.5095 -1.9127 30 1 -0.9931 4.1503 -2.9615 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490876308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = 86.117322 kcal Electronic energy + Delta-G solvation = -18908.035584 eV Core-core repulsion = 15835.301092 eV Total energy + Delta-G solvation = -3072.734492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51647 -36.27838 -35.71700 -34.37813 -32.86330 -31.98673 -31.08378 -29.64387 -26.54739 -26.53850 -23.81118 -21.21611 -20.74023 -18.42661 -17.85427 -17.10332 -16.58375 -16.28636 -15.18490 -15.07968 -14.60742 -14.36651 -13.56487 -13.45491 -13.29336 -12.90034 -12.46028 -12.32015 -12.28927 -11.82090 -11.21858 -10.97870 -10.72166 -10.70842 -10.45820 -10.39905 -10.25352 -10.03436 -9.63604 -9.20064 -9.03540 -8.77765 -8.28255 -8.20155 -6.57387 -3.90079 1.70223 2.26046 2.94590 3.04933 3.10213 3.17902 3.27451 3.82759 4.05070 4.25268 4.56243 4.68137 4.87634 5.01336 5.15482 5.27457 5.49919 5.63340 5.77829 6.02998 6.10822 6.22112 6.41591 6.77929 6.89528 7.04024 7.19368 7.29623 7.40473 8.03718 8.21328 8.59254 8.98450 9.03310 10.33757 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.008778 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.827370 B = 3188.997890 C = 3497.906850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.105 4.105 3 C 0.233 3.767 4 N -0.780 5.780 5 C -0.223 4.223 6 H 0.125 0.875 7 C 0.027 3.973 8 N -0.811 5.811 9 Si 0.931 3.069 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.280 1.280 13 S 2.534 3.466 14 O -0.979 6.979 15 O -0.994 6.994 16 C -0.455 4.455 17 C -0.215 4.215 18 C 0.028 3.972 19 N -0.381 5.381 20 C 0.101 3.899 21 N -0.180 5.180 22 H 0.192 0.808 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.275 0.725 26 H 0.147 0.853 27 H 0.170 0.830 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 4.292 0.856 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.107 4.107 3 C 0.108 3.892 4 N -0.602 5.602 5 C -0.373 4.373 6 H 0.142 0.858 7 C -0.186 4.186 8 N -0.451 5.451 9 Si 0.756 3.244 10 H -0.184 1.184 11 H -0.200 1.200 12 H -0.206 1.206 13 S 2.628 3.372 14 O -0.967 6.967 15 O -0.982 6.982 16 C -0.695 4.695 17 C -0.245 4.245 18 C -0.116 4.116 19 N -0.165 5.165 20 C -0.041 4.041 21 N -0.003 5.003 22 H 0.209 0.791 23 H 0.135 0.865 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.165 0.835 27 H 0.187 0.813 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.425 4.130 0.320 6.826 hybrid contribution -1.056 0.554 -0.157 1.203 sum -6.481 4.684 0.163 7.998 Atomic orbital electron populations 1.24059 0.95171 1.03643 1.05982 1.23321 0.94501 0.97484 0.95433 1.18551 0.83978 0.94581 0.92121 1.55551 1.70508 1.18881 1.15267 1.20304 1.29363 1.00806 0.86797 0.85767 1.25654 0.95232 0.98271 0.99476 1.70265 1.21064 1.14815 1.38925 0.85768 0.79459 0.79246 0.79925 1.18361 1.20031 1.20558 1.12794 0.77866 0.73064 0.73518 1.93362 1.61724 1.78306 1.63303 1.93339 1.85450 1.85695 1.33727 1.37146 1.20647 1.11817 0.99936 1.21139 0.98409 1.00503 1.04497 1.22392 0.97912 0.99077 0.92241 1.49135 1.17657 1.25540 1.24190 1.21787 0.82905 1.02199 0.97192 1.77548 0.96006 1.07085 1.19706 0.79079 0.86541 0.89974 0.91370 0.83478 0.81286 0.90997 0.90046 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.90 19.25 29.55 0.57 -5.33 16 2 C -0.10 -2.45 11.25 -37.12 -0.42 -2.87 16 3 C 0.23 5.36 5.45 -6.83 -0.04 5.32 16 4 N -0.78 -19.19 2.88 -62.78 -0.18 -19.37 16 5 C -0.22 -5.55 9.48 -15.06 -0.14 -5.69 16 6 H 0.12 3.14 7.22 -52.48 -0.38 2.76 16 7 C 0.03 0.63 4.92 -17.43 -0.09 0.55 16 8 N -0.81 -19.36 8.97 55.49 0.50 -18.86 16 9 Si 0.93 18.49 29.62 -169.99 -5.04 13.45 16 10 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 13 S 2.53 62.99 5.80 -107.50 -0.62 62.36 16 14 O -0.98 -26.40 16.80 -57.17 -0.96 -27.36 16 15 O -0.99 -25.27 16.54 -57.17 -0.95 -26.22 16 16 C -0.45 -10.66 7.21 -17.37 -0.13 -10.79 16 17 C -0.22 -4.33 10.71 -40.01 -0.43 -4.76 16 18 C 0.03 0.48 11.49 -17.23 -0.20 0.28 16 19 N -0.38 -6.93 4.01 -68.16 -0.27 -7.20 16 20 C 0.10 1.25 11.47 59.85 0.69 1.94 16 21 N -0.18 -4.15 12.58 31.27 0.39 -3.76 16 22 H 0.19 3.52 7.80 -54.08 -0.42 3.10 16 23 H 0.12 2.63 6.41 -51.93 -0.33 2.30 16 24 H 0.08 1.77 6.95 -51.93 -0.36 1.41 16 25 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 26 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 27 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 286.98 15.07 4.32 4.32 Total: -1.00 -32.67 286.98 -5.73 -38.39 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -2.74 Total: 5.59 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -0.18 Total: -21.35 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.44 Total: -49.19 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.91 Total: -53.57 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.45 kcal Atomic # 16 Polarization: 62.99 SS G_CDS: -0.62 Total: 62.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.67 -5.73 -38.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.509 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds