Wall clock time and date at job start Mon Mar 30 2020 01:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47019 * 137.80539 * 3 2 1 5 5 C 1.36936 * 119.99766 * 273.21762 * 4 3 2 6 6 H 1.08005 * 120.00204 * 186.70241 * 5 4 3 7 7 C 1.38814 * 120.00104 * 6.70622 * 5 4 3 8 8 N 1.31615 * 119.99836 * 25.21715 * 7 5 4 9 9 Si 1.86801 * 119.99997 * 205.22020 * 7 5 4 10 10 H 1.48496 * 109.47361 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47118 * 119.99927 * 9 7 5 12 12 H 1.48501 * 109.47176 * 239.99490 * 9 7 5 13 13 S 1.65600 * 120.00445 * 93.22212 * 4 3 2 14 14 O 1.42096 * 106.40384 * 156.46161 * 13 4 3 15 15 O 1.42096 * 106.40138 * 23.53771 * 13 4 3 16 16 C 1.76207 * 107.21478 * 269.99863 * 13 4 3 17 17 C 1.39870 * 125.89799 * 150.01420 * 16 13 4 18 18 C 1.35312 * 107.92029 * 179.97438 * 17 16 13 19 19 N 1.34945 * 107.74529 * 359.97438 * 18 17 16 20 20 C 1.46498 * 126.03454 * 180.02562 * 19 18 17 21 21 N 1.30836 * 125.89850 * 329.97169 * 16 13 4 22 22 H 4.40638 * 5.51428 * 180.02562 * 4 1 2 23 23 H 1.08994 * 109.47436 * 17.80256 * 3 2 1 24 24 H 1.09002 * 109.46788 * 257.79683 * 3 2 1 25 25 H 0.97003 * 119.99794 * 179.97438 * 8 7 5 26 26 H 1.08000 * 126.03653 * 359.97438 * 17 16 13 27 27 H 1.08001 * 126.12772 * 180.02562 * 18 17 16 28 28 H 1.09008 * 109.47005 * 270.02703 * 20 19 18 29 29 H 1.09000 * 109.47664 * 30.02036 * 20 19 18 30 30 H 1.09003 * 109.47467 * 150.02859 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0242 -0.9277 5 6 3.2994 0.7236 -2.2534 6 1 3.7598 1.4412 -2.9164 7 6 2.8754 -0.5033 -2.7451 8 7 1.9124 -1.1600 -2.1339 9 14 3.6718 -1.2223 -4.2743 10 1 4.7216 -0.2954 -4.7681 11 1 4.2857 -2.5333 -3.9428 12 1 2.6415 -1.4104 -5.3271 13 16 3.4852 2.5445 -0.3733 14 8 4.4103 3.1041 -1.2953 15 8 3.7554 2.4127 1.0155 16 6 2.0113 3.5011 -0.5048 17 6 1.6492 4.5679 0.3242 18 6 0.4534 5.0379 -0.1004 19 7 0.0727 4.2953 -1.1608 20 6 -1.1625 4.4620 -1.9308 21 7 1.0669 3.3367 -1.3953 22 1 -1.0502 -0.0001 0.0003 23 1 3.0098 -0.9776 -0.3142 24 1 3.0092 0.2181 1.0045 25 1 1.6159 -2.0172 -2.4778 26 1 2.2227 4.9491 1.1562 27 1 -0.0971 5.8606 0.3314 28 1 -1.9502 3.8502 -1.4909 29 1 -1.4634 5.5095 -1.9127 30 1 -0.9931 4.1503 -2.9615 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490876308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:14 Heat of formation + Delta-G solvation = 62.102006 kcal Electronic energy + Delta-G solvation = -18909.076966 eV Core-core repulsion = 15835.301092 eV Total energy + Delta-G solvation = -3073.775875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97637 -38.10079 -37.71192 -36.39117 -34.18748 -33.79387 -32.88642 -31.10825 -28.35565 -27.79498 -25.65545 -22.81187 -22.11380 -20.26848 -19.63780 -18.65866 -18.39585 -18.06510 -16.77575 -16.57625 -16.38788 -16.06820 -15.28039 -15.04433 -14.78244 -14.38603 -14.11597 -13.65048 -13.56032 -13.39432 -13.09147 -12.74340 -12.67142 -12.57948 -12.27401 -12.19760 -11.95275 -11.68397 -11.39696 -10.95365 -10.59988 -10.50299 -10.09448 -9.65528 -8.37164 -5.78948 -0.14763 0.77789 1.47308 1.51292 1.56196 1.65747 1.72846 2.09992 2.36005 2.48598 2.79841 2.85164 3.18882 3.70267 3.94150 4.00709 4.11938 4.38109 4.46801 4.56697 4.62840 4.71749 4.83346 4.96867 5.23576 5.37247 5.41280 5.50453 6.15788 6.34965 6.51216 6.73031 7.16983 7.24188 8.54250 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.008778 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.827370 B = 3188.997890 C = 3497.906850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.139 4.139 3 C 0.233 3.767 4 N -0.787 5.787 5 C -0.250 4.250 6 H 0.110 0.890 7 C 0.001 3.999 8 N -0.825 5.825 9 Si 0.993 3.007 10 H -0.264 1.264 11 H -0.264 1.264 12 H -0.275 1.275 13 S 2.544 3.456 14 O -1.011 7.011 15 O -1.009 7.009 16 C -0.488 4.488 17 C -0.253 4.253 18 C 0.058 3.942 19 N -0.375 5.375 20 C 0.088 3.912 21 N -0.226 5.226 22 H 0.223 0.777 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.282 0.718 26 H 0.158 0.842 27 H 0.231 0.769 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 4.941 0.508 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.142 4.142 3 C 0.108 3.892 4 N -0.609 5.609 5 C -0.400 4.400 6 H 0.128 0.872 7 C -0.211 4.211 8 N -0.463 5.463 9 Si 0.815 3.185 10 H -0.188 1.188 11 H -0.188 1.188 12 H -0.201 1.201 13 S 2.641 3.359 14 O -1.000 7.000 15 O -0.998 6.998 16 C -0.730 4.730 17 C -0.283 4.283 18 C -0.088 4.088 19 N -0.160 5.160 20 C -0.052 4.052 21 N -0.051 5.051 22 H 0.240 0.760 23 H 0.133 0.867 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.175 0.825 27 H 0.247 0.753 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.565 4.740 -0.022 8.927 hybrid contribution -0.586 0.461 -0.035 0.746 sum -8.151 5.201 -0.058 9.669 Atomic orbital electron populations 1.24830 0.96071 1.02251 1.04594 1.23567 0.95073 0.98794 0.96738 1.18559 0.84443 0.94136 0.92064 1.55454 1.71267 1.18785 1.15380 1.20338 1.30986 1.01580 0.87110 0.87208 1.26357 0.95169 0.97680 1.01858 1.70325 1.21242 1.15033 1.39740 0.84871 0.78431 0.78587 0.76598 1.18823 1.18831 1.20090 1.12213 0.77739 0.73190 0.72738 1.93302 1.63460 1.79136 1.64077 1.93294 1.86066 1.86102 1.34358 1.36637 1.20809 1.13638 1.01916 1.21530 1.00562 1.00754 1.05454 1.23217 0.96469 0.98745 0.90345 1.49559 1.17901 1.24012 1.24496 1.22293 0.80850 1.05650 0.96385 1.77428 0.97465 1.09604 1.20615 0.75986 0.86664 0.89470 0.90776 0.82474 0.75266 0.89346 0.85336 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.04 19.25 74.32 1.43 -9.61 16 2 C -0.14 -6.52 11.25 31.12 0.35 -6.17 16 3 C 0.23 10.99 5.45 84.57 0.46 11.45 16 4 N -0.79 -39.97 2.88 -352.52 -1.02 -40.98 16 5 C -0.25 -12.85 9.48 84.03 0.80 -12.06 16 6 H 0.11 5.82 7.22 -2.91 -0.02 5.80 16 7 C 0.00 0.06 4.92 84.86 0.42 0.47 16 8 N -0.82 -39.21 8.97 21.65 0.19 -39.02 16 9 Si 0.99 37.72 29.62 68.60 2.03 39.75 16 10 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 11 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 12 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 13 S 2.54 131.12 5.80 -56.49 -0.33 130.79 16 14 O -1.01 -57.01 16.80 -128.00 -2.15 -59.16 16 15 O -1.01 -53.06 16.54 -128.00 -2.12 -55.18 16 16 C -0.49 -23.14 7.21 85.24 0.61 -22.53 16 17 C -0.25 -9.92 10.71 21.99 0.24 -9.68 16 18 C 0.06 1.75 11.49 83.54 0.96 2.71 16 19 N -0.37 -12.65 4.01 -369.56 -1.48 -14.14 16 20 C 0.09 1.84 11.47 127.77 1.47 3.30 16 21 N -0.23 -10.35 12.58 -54.97 -0.69 -11.04 16 22 H 0.22 7.63 7.80 -4.41 -0.03 7.60 16 23 H 0.12 5.36 6.41 -2.39 -0.02 5.34 16 24 H 0.09 3.90 6.95 -2.39 -0.02 3.89 16 25 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 26 H 0.16 5.56 8.06 -2.91 -0.02 5.54 16 27 H 0.23 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.63 286.98 2.33 -70.30 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.16 Total: 20.78 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 6.73 Total: -42.10 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.00 Total: -105.18 kcal Atomic # 8 Polarization: -110.07 SS G_CDS: -4.27 Total: -114.34 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 131.12 SS G_CDS: -0.33 Total: 130.79 kcal Total: -72.63 2.33 -70.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490876308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.398 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds