Wall clock time and date at job start Mon Mar 30 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99988 * 3 2 1 5 5 H 1.48504 * 109.46960 * 29.99450 * 3 2 1 6 6 H 1.48490 * 109.47608 * 149.99686 * 3 2 1 7 7 C 1.37880 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47255 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47476 * 179.97438 * 10 9 7 12 12 O 1.20820 * 119.99719 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99980 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99821 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47405 * 180.02562 * 14 13 11 16 16 C 1.38606 * 120.42134 * 359.97428 * 15 14 13 17 17 C 1.38667 * 118.43634 * 180.02562 * 16 15 14 18 18 C 1.38187 * 119.19469 * 0.02562 * 17 16 15 19 19 N 1.31884 * 120.77685 * 359.97438 * 18 17 16 20 20 C 1.31969 * 121.70563 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 119.63069 * 179.97438 * 20 19 18 22 22 H 0.96992 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47233 * 59.99568 * 9 7 2 24 24 H 1.08998 * 109.47178 * 299.99313 * 9 7 2 25 25 H 1.09004 * 109.46836 * 59.99958 * 10 9 7 26 26 H 1.09004 * 109.47651 * 300.00196 * 10 9 7 27 27 H 1.09006 * 109.47275 * 60.00323 * 14 13 11 28 28 H 1.09002 * 109.47449 * 300.00418 * 14 13 11 29 29 H 1.08007 * 120.78524 * 0.05026 * 16 15 14 30 30 H 1.08004 * 120.40720 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.61217 * 180.25801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9673 0.0012 12 8 0.2835 -4.9672 0.0011 13 8 2.1629 -6.1297 0.0008 14 6 1.3721 -7.3474 0.0008 15 6 2.2901 -8.5426 0.0010 16 6 3.6655 -8.3711 0.0005 17 6 4.4715 -9.4994 0.0001 18 6 3.8818 -10.7491 -0.0003 19 7 2.5690 -10.8758 0.0001 20 6 1.7708 -9.8249 0.0005 21 17 0.0499 -10.0542 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.7430 -7.3722 -0.8890 28 1 0.7435 -7.3724 0.8910 29 1 4.0993 -7.3820 0.0008 30 1 5.5472 -9.4028 0.0001 31 1 4.5031 -11.6325 0.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:25 Heat of formation + Delta-G solvation = -71.142143 kcal Electronic energy + Delta-G solvation = -17121.221751 eV Core-core repulsion = 14007.331519 eV Total energy + Delta-G solvation = -3113.890232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74602 -39.90002 -36.93151 -36.44384 -33.64339 -33.34791 -31.98002 -31.15713 -27.47170 -25.81076 -24.01706 -22.80543 -21.85159 -19.90455 -17.79835 -17.59052 -16.73368 -16.48398 -16.33336 -15.90227 -14.97309 -14.95029 -14.49072 -14.10217 -13.78712 -13.51258 -12.68079 -12.44902 -12.29326 -12.04211 -11.96728 -11.50073 -11.24678 -10.99965 -10.81105 -10.68035 -10.11929 -10.08310 -10.05045 -9.96765 -9.61782 -9.22342 -9.19024 -8.41324 -6.05014 -4.10296 0.51776 0.81724 1.50928 2.71801 2.82616 3.25921 3.29218 3.35746 3.38254 4.04928 4.38130 4.42145 4.49529 4.64551 4.84766 5.03422 5.16341 5.21320 5.30528 5.46611 5.71939 5.79110 6.04244 6.11240 6.11473 6.53730 6.82829 7.32089 7.61982 7.68154 7.93718 8.16492 8.32937 8.96715 9.54056 11.05962 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.003333 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.460061 B = 8398.762883 C = 9104.474206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.458 3.542 12 O -0.500 6.500 13 O -0.366 6.366 14 C 0.107 3.893 15 C -0.120 4.120 16 C -0.041 4.041 17 C -0.168 4.168 18 C 0.112 3.888 19 N -0.476 5.476 20 C 0.177 3.823 21 Cl -0.026 7.026 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.146 0.854 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 -20.347 0.006 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.302 3.698 12 O -0.385 6.385 13 O -0.284 6.284 14 C 0.033 3.967 15 C -0.123 4.123 16 C -0.067 4.067 17 C -0.187 4.187 18 C -0.045 4.045 19 N -0.186 5.186 20 C 0.013 3.987 21 Cl 0.003 6.997 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.164 0.836 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.422 -21.116 0.012 22.382 hybrid contribution 0.469 1.528 -0.011 1.598 sum 7.891 -19.588 0.001 21.118 Atomic orbital electron populations 1.69986 1.06105 1.26832 1.49775 1.25023 0.94859 0.99364 0.95071 0.86535 0.79754 0.83205 0.78144 1.20590 1.21176 1.19780 1.21137 0.93057 0.90599 1.51997 0.92290 1.19033 0.93238 0.89248 0.98986 1.21792 1.00715 0.87332 1.04080 1.24836 0.88054 0.85278 0.71676 1.90659 1.15810 1.87459 1.44592 1.86477 1.41926 1.14732 1.85259 1.21535 0.91418 0.79780 1.04013 1.20345 0.95713 0.93214 1.03024 1.21617 0.91570 1.00817 0.92718 1.22314 1.02062 0.93148 1.01222 1.22732 0.89158 0.97788 0.94798 1.67072 1.05744 1.32707 1.13113 1.21318 0.88051 0.88923 1.00437 1.98429 1.07383 1.97629 1.96264 0.92797 0.95534 0.95513 0.88833 0.88827 0.89157 0.89166 0.82420 0.83594 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.82 4.26 -27.89 -0.12 0.70 16 10 C -0.10 -1.96 5.75 -27.88 -0.16 -2.12 16 11 C 0.46 8.53 7.96 36.01 0.29 8.81 16 12 O -0.50 -10.96 15.73 -18.75 -0.29 -11.25 16 13 O -0.37 -5.50 8.77 -39.25 -0.34 -5.84 16 14 C 0.11 1.43 4.84 36.01 0.17 1.61 16 15 C -0.12 -1.40 5.90 -104.44 -0.62 -2.02 16 16 C -0.04 -0.41 9.49 -39.29 -0.37 -0.78 16 17 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 18 C 0.11 0.93 11.18 -17.55 -0.20 0.74 16 19 N -0.48 -5.43 10.34 -10.36 -0.11 -5.54 16 20 C 0.18 2.11 7.27 -17.45 -0.13 1.99 16 21 Cl -0.03 -0.30 28.15 -51.86 -1.46 -1.76 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 27 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 28 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 29 H 0.16 1.43 7.10 -52.48 -0.37 1.06 16 30 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -32.20 296.47 -7.25 -39.45 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -3.29 Total: -3.73 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.94 Total: -5.97 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.63 Total: -31.44 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.64 Total: -17.10 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.46 Total: -1.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.20 -7.25 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.691 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds