Wall clock time and date at job start Mon Mar 30 2020 00:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00179 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99988 * 3 2 1 5 5 H 1.48504 * 109.46960 * 29.99450 * 3 2 1 6 6 H 1.48490 * 109.47608 * 149.99686 * 3 2 1 7 7 C 1.37880 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47255 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47476 * 179.97438 * 10 9 7 12 12 O 1.20820 * 119.99719 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99980 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99821 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47405 * 180.02562 * 14 13 11 16 16 C 1.38606 * 120.42134 * 359.97428 * 15 14 13 17 17 C 1.38667 * 118.43634 * 180.02562 * 16 15 14 18 18 C 1.38187 * 119.19469 * 0.02562 * 17 16 15 19 19 N 1.31884 * 120.77685 * 359.97438 * 18 17 16 20 20 C 1.31969 * 121.70563 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 119.63069 * 179.97438 * 20 19 18 22 22 H 0.96992 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47233 * 59.99568 * 9 7 2 24 24 H 1.08998 * 109.47178 * 299.99313 * 9 7 2 25 25 H 1.09004 * 109.46836 * 59.99958 * 10 9 7 26 26 H 1.09004 * 109.47651 * 300.00196 * 10 9 7 27 27 H 1.09006 * 109.47275 * 60.00323 * 14 13 11 28 28 H 1.09002 * 109.47449 * 300.00418 * 14 13 11 29 29 H 1.08007 * 120.78524 * 0.05026 * 16 15 14 30 30 H 1.08004 * 120.40720 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.61217 * 180.25801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9673 0.0012 12 8 0.2835 -4.9672 0.0011 13 8 2.1629 -6.1297 0.0008 14 6 1.3721 -7.3474 0.0008 15 6 2.2901 -8.5426 0.0010 16 6 3.6655 -8.3711 0.0005 17 6 4.4715 -9.4994 0.0001 18 6 3.8818 -10.7491 -0.0003 19 7 2.5690 -10.8758 0.0001 20 6 1.7708 -9.8249 0.0005 21 17 0.0499 -10.0542 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8719 -3.6044 -0.8894 27 1 0.7430 -7.3722 -0.8890 28 1 0.7435 -7.3724 0.8910 29 1 4.0993 -7.3820 0.0008 30 1 5.5472 -9.4028 0.0001 31 1 4.5031 -11.6325 0.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:25 Heat of formation + Delta-G solvation = -90.484634 kcal Electronic energy + Delta-G solvation = -17122.060505 eV Core-core repulsion = 14007.331519 eV Total energy + Delta-G solvation = -3114.728985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77132 -41.10329 -37.85511 -37.77683 -35.64116 -34.27245 -33.13423 -32.65881 -28.75054 -27.45217 -24.92498 -24.13542 -23.12009 -21.46453 -19.14403 -18.57930 -18.24042 -17.82093 -17.35806 -17.29728 -16.45830 -16.00076 -15.93623 -15.11382 -15.01255 -14.49534 -14.22763 -14.05424 -13.82107 -13.20854 -12.87408 -12.83141 -12.81918 -12.49512 -12.36209 -12.12376 -11.96875 -11.74711 -11.47673 -11.27743 -10.87078 -10.75055 -10.56510 -9.97910 -8.18805 -6.32442 -0.23251 0.07565 0.68384 1.21025 1.43745 1.46985 1.51738 1.58627 2.44110 2.53264 3.15449 3.21293 3.57319 3.70807 3.91499 4.00987 4.04128 4.06261 4.35813 4.43459 4.48043 4.54140 4.88425 5.01505 5.05231 5.34392 5.47218 5.49094 5.56924 5.82203 6.14014 6.59542 6.74804 6.87051 7.38035 8.93831 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.003333 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.460061 B = 8398.762883 C = 9104.474206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.035 3.965 10 C -0.091 4.091 11 C 0.468 3.532 12 O -0.541 6.541 13 O -0.346 6.346 14 C 0.108 3.892 15 C -0.134 4.134 16 C -0.050 4.050 17 C -0.149 4.149 18 C 0.114 3.886 19 N -0.499 5.499 20 C 0.162 3.838 21 Cl -0.038 7.038 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.186 0.814 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.063 -20.885 0.012 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.098 0.902 9 C -0.002 4.002 10 C -0.128 4.128 11 C 0.313 3.687 12 O -0.430 6.430 13 O -0.263 6.263 14 C 0.034 3.966 15 C -0.138 4.138 16 C -0.075 4.075 17 C -0.168 4.168 18 C -0.043 4.043 19 N -0.210 5.210 20 C -0.001 4.001 21 Cl -0.010 7.010 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.183 0.817 30 H 0.204 0.796 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.021 -21.684 0.017 24.324 hybrid contribution -0.565 1.555 -0.014 1.655 sum 10.456 -20.129 0.003 22.683 Atomic orbital electron populations 1.70158 1.08267 1.27897 1.51330 1.26101 0.95699 1.03888 0.94596 0.85320 0.78719 0.77734 0.78485 1.19786 1.21409 1.17789 1.21653 0.94191 0.91193 1.50968 0.90199 1.18826 0.93796 0.92066 0.95500 1.21536 0.99256 0.85400 1.06633 1.24601 0.87245 0.86178 0.70703 1.90657 1.17590 1.88129 1.46651 1.86422 1.41175 1.14350 1.84393 1.21598 0.91866 0.79530 1.03629 1.20201 0.96404 0.92071 1.05081 1.21854 0.90818 1.02203 0.92654 1.22721 1.03776 0.91807 0.98541 1.23460 0.88322 0.99660 0.92854 1.67105 1.07241 1.32601 1.14047 1.21317 0.87849 0.89254 1.01713 1.98417 1.08489 1.97668 1.96402 0.92818 0.99209 0.99183 0.86174 0.86152 0.89758 0.89766 0.81654 0.79623 0.78025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.18 16 3 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.04 1.86 4.26 29.85 0.13 1.99 16 10 C -0.09 -3.42 5.75 29.85 0.17 -3.25 16 11 C 0.47 17.39 7.96 71.24 0.57 17.95 16 12 O -0.54 -24.63 15.73 21.98 0.35 -24.29 16 13 O -0.35 -10.09 8.77 -51.38 -0.45 -10.54 16 14 C 0.11 2.90 4.84 71.24 0.34 3.25 16 15 C -0.13 -3.02 5.90 -19.75 -0.12 -3.13 16 16 C -0.05 -0.84 9.49 22.46 0.21 -0.63 16 17 C -0.15 -1.66 10.11 22.36 0.23 -1.44 16 18 C 0.11 1.50 11.18 84.67 0.95 2.45 16 19 N -0.50 -10.57 10.34 -186.69 -1.93 -12.50 16 20 C 0.16 3.78 7.27 84.70 0.62 4.40 16 21 Cl -0.04 -0.91 28.15 -2.72 -0.08 -0.99 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H -0.01 -0.62 8.10 -2.38 -0.02 -0.64 16 24 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 25 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16 26 H 0.12 3.91 8.14 -2.38 -0.02 3.89 16 27 H 0.08 2.35 8.13 -2.38 -0.02 2.33 16 28 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 29 H 0.17 2.51 7.10 -2.91 -0.02 2.49 16 30 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -72.31 296.47 5.13 -67.17 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.14 Total: 1.09 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.79 Total: -7.47 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.65 Total: -69.91 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.10 Total: -34.83 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -72.31 5.13 -67.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.313 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds