Wall clock time and date at job start Mon Mar 30 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47175 * 2 1 4 4 O 1.42899 * 109.47183 * 119.99600 * 2 1 3 5 5 C 1.35001 * 116.99993 * 270.00332 * 4 2 1 6 6 O 1.21688 * 120.00390 * 359.97438 * 5 4 2 7 7 C 1.41759 * 119.99893 * 180.02562 * 5 4 2 8 8 S 1.75834 * 125.45427 * 0.02562 * 7 5 4 9 9 C 1.75655 * 91.48796 * 179.97438 * 8 7 5 10 10 C 1.32868 * 110.86875 * 359.97438 * 9 8 7 11 11 C 1.39678 * 115.27666 * 359.76959 * 10 9 8 12 12 C 1.40507 * 123.35957 * 180.27369 * 11 10 9 13 13 H 1.08005 * 119.99814 * 154.78956 * 12 11 10 14 14 C 1.40332 * 120.00331 * 334.79262 * 12 11 10 15 15 N 1.30622 * 119.99686 * 349.96412 * 14 12 11 16 16 Si 1.86804 * 120.00318 * 169.96608 * 14 12 11 17 17 H 1.48498 * 109.46730 * 89.99796 * 16 14 12 18 18 H 1.48494 * 109.47074 * 209.99616 * 16 14 12 19 19 H 1.48499 * 109.46670 * 330.00061 * 16 14 12 20 20 C 1.50699 * 109.47587 * 240.00138 * 2 1 3 21 21 N 1.34776 * 120.00061 * 64.99244 * 20 2 1 22 22 O 1.21284 * 119.99935 * 245.00110 * 20 2 1 23 23 H 1.08992 * 109.47064 * 300.00293 * 1 2 3 24 24 H 1.09000 * 109.46531 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46832 * 60.00370 * 1 2 3 26 26 H 1.08006 * 124.56321 * 180.02562 * 9 8 7 27 27 H 1.07999 * 122.35987 * 179.97438 * 10 9 8 28 28 H 0.97008 * 119.99870 * 179.97438 * 15 14 12 29 29 H 0.96999 * 120.00228 * 0.02562 * 21 20 2 30 30 H 0.96998 * 120.00085 * 180.02562 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2106 0.0793 2.2686 6 8 1.9901 1.2756 2.2377 7 6 2.6830 -0.5236 3.4615 8 16 3.0489 -2.2313 3.6655 9 6 3.5173 -1.9780 5.3394 10 6 3.3943 -0.6988 5.6769 11 6 2.9387 0.1449 4.6611 12 6 2.7526 1.5273 4.8303 13 1 2.8004 2.1870 3.9765 14 6 2.5046 2.0507 6.1085 15 7 2.2522 1.2460 7.1060 16 14 2.5354 3.8981 6.3835 17 1 1.1760 4.4539 6.1638 18 1 2.9683 4.1843 7.7748 19 1 3.4863 4.5245 5.4303 20 6 2.0325 -0.7103 -1.2304 21 7 1.7920 -0.1942 -2.4520 22 8 2.6531 -1.7466 -1.1214 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 3.8601 -2.7570 6.0044 27 1 3.6329 -0.3363 6.6658 28 1 2.0811 1.6078 7.9897 29 1 1.2958 0.6347 -2.5392 30 1 2.1151 -0.6516 -3.2440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:03 Heat of formation + Delta-G solvation = -108.051371 kcal Electronic energy + Delta-G solvation = -18087.821472 eV Core-core repulsion = 14974.374442 eV Total energy + Delta-G solvation = -3113.447030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93816 -38.58090 -36.76379 -35.02942 -33.77259 -33.25994 -31.11530 -29.09928 -26.81249 -24.59382 -22.73452 -20.98001 -19.89700 -18.83612 -17.91286 -17.63190 -16.27738 -16.19340 -15.52138 -15.31053 -14.97608 -14.43940 -13.98730 -13.76185 -13.12730 -12.67271 -12.54958 -12.30285 -12.02748 -11.85548 -11.52037 -11.22736 -11.20440 -11.00257 -10.49170 -10.31379 -10.01432 -9.70704 -9.67300 -9.50914 -9.26466 -8.87270 -7.56192 -7.22629 -7.18640 -4.69379 1.91487 2.73774 2.88051 2.90939 2.98699 3.17400 3.18806 3.60573 3.71133 3.77410 4.13871 4.22123 4.92128 5.10911 5.21980 5.34047 5.59783 5.92954 6.07462 6.26101 6.63574 6.71717 6.82380 7.02056 7.16382 7.29119 7.45777 7.50827 7.71901 8.21009 8.33602 8.41452 8.53116 9.27311 9.69727 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.006346 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.938804 B = 4411.416748 C = 5461.520257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.103 0.897 4 O -0.340 6.340 5 C 0.533 3.467 6 O -0.550 6.550 7 C -0.411 4.411 8 S -0.003 6.003 9 C -0.201 4.201 10 C -0.112 4.112 11 C 0.143 3.857 12 C -0.363 4.363 13 H 0.113 0.887 14 C 0.065 3.935 15 N -0.764 5.764 16 Si 0.929 3.071 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.254 1.254 20 C 0.520 3.480 21 N -0.855 5.855 22 O -0.519 6.519 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.292 0.708 29 H 0.401 0.599 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 1.657 -7.389 7.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.258 6.258 5 C 0.390 3.610 6 O -0.447 6.447 7 C -0.527 4.527 8 S 0.253 5.747 9 C -0.335 4.335 10 C -0.144 4.144 11 C 0.132 3.868 12 C -0.393 4.393 13 H 0.131 0.869 14 C -0.159 4.159 15 N -0.387 5.387 16 Si 0.751 3.249 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.177 1.177 20 C 0.304 3.696 21 N -0.422 5.422 22 O -0.393 6.393 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.103 0.897 29 H 0.229 0.771 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.061 0.019 -7.818 8.085 hybrid contribution -0.189 2.169 0.730 2.296 sum -2.250 2.188 -7.087 7.751 Atomic orbital electron populations 1.22152 0.93069 1.03332 1.03431 1.21659 0.95264 0.97760 0.84132 0.87966 1.86388 1.78982 1.41427 1.19012 1.18351 0.76246 0.84629 0.81781 1.90692 1.54836 1.15653 1.83551 1.20981 1.38537 0.94722 0.98466 1.83443 1.74091 1.09946 1.07172 1.25320 1.08607 1.00189 0.99424 1.20563 1.00782 0.92161 1.00944 1.16914 0.87924 0.93631 0.88342 1.20194 1.32004 0.92808 0.94279 0.86921 1.26456 0.91882 1.02399 0.95140 1.69675 1.28344 1.38470 1.02245 0.85941 0.80383 0.79961 0.78575 1.18713 1.19697 1.17724 1.20514 0.79033 0.85179 0.84861 1.43734 1.61116 1.29541 1.07791 1.90767 1.38935 1.23081 1.86513 0.90377 0.91443 0.91312 0.84185 0.83822 0.89696 0.77102 0.76716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.07 1.29 2.93 -27.88 -0.08 1.21 16 3 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 4 O -0.34 -7.93 9.06 -48.07 -0.44 -8.36 16 5 C 0.53 13.75 7.69 32.08 0.25 14.00 16 6 O -0.55 -14.53 13.57 -19.41 -0.26 -14.80 16 7 C -0.41 -10.92 6.36 -37.69 -0.24 -11.16 16 8 S 0.00 -0.08 23.02 -107.50 -2.47 -2.55 16 9 C -0.20 -4.46 11.11 28.88 0.32 -4.14 16 10 C -0.11 -2.72 8.81 -40.90 -0.36 -3.08 16 11 C 0.14 3.81 5.53 -107.96 -0.60 3.21 16 12 C -0.36 -9.48 8.40 -37.94 -0.32 -9.80 16 13 H 0.11 3.05 6.07 -52.48 -0.32 2.73 16 14 C 0.06 1.51 5.37 -17.28 -0.09 1.42 16 15 N -0.76 -17.78 10.87 55.57 0.60 -17.18 16 16 Si 0.93 17.61 29.57 -169.99 -5.03 12.58 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.25 -4.85 7.11 56.52 0.40 -4.45 16 20 C 0.52 8.53 7.45 -10.99 -0.08 8.45 16 21 N -0.86 -8.71 8.84 31.22 0.28 -8.43 16 22 O -0.52 -10.98 17.34 -14.31 -0.25 -11.23 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 26 H 0.14 2.60 8.06 -52.48 -0.42 2.18 16 27 H 0.14 3.42 6.37 -52.49 -0.33 3.08 16 28 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 29 H 0.40 2.77 8.61 -40.82 -0.35 2.42 16 30 H 0.40 3.41 8.93 -40.82 -0.36 3.04 16 LS Contribution 284.37 15.07 4.29 4.29 Total: -1.00 -32.15 284.37 -6.69 -38.84 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.55 Total: 8.76 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.85 Total: -1.90 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.88 Total: -25.61 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.95 Total: -34.39 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.55 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.15 -6.69 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.214 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds