Wall clock time and date at job start Mon Mar 30 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47175 * 2 1 4 4 O 1.42899 * 109.47183 * 119.99600 * 2 1 3 5 5 C 1.35001 * 116.99993 * 270.00332 * 4 2 1 6 6 O 1.21688 * 120.00390 * 359.97438 * 5 4 2 7 7 C 1.41759 * 119.99893 * 180.02562 * 5 4 2 8 8 S 1.75834 * 125.45427 * 0.02562 * 7 5 4 9 9 C 1.75655 * 91.48796 * 179.97438 * 8 7 5 10 10 C 1.32868 * 110.86875 * 359.97438 * 9 8 7 11 11 C 1.39678 * 115.27666 * 359.76959 * 10 9 8 12 12 C 1.40507 * 123.35957 * 180.27369 * 11 10 9 13 13 H 1.08005 * 119.99814 * 154.78956 * 12 11 10 14 14 C 1.40332 * 120.00331 * 334.79262 * 12 11 10 15 15 N 1.30622 * 119.99686 * 349.96412 * 14 12 11 16 16 Si 1.86804 * 120.00318 * 169.96608 * 14 12 11 17 17 H 1.48498 * 109.46730 * 89.99796 * 16 14 12 18 18 H 1.48494 * 109.47074 * 209.99616 * 16 14 12 19 19 H 1.48499 * 109.46670 * 330.00061 * 16 14 12 20 20 C 1.50699 * 109.47587 * 240.00138 * 2 1 3 21 21 N 1.34776 * 120.00061 * 64.99244 * 20 2 1 22 22 O 1.21284 * 119.99935 * 245.00110 * 20 2 1 23 23 H 1.08992 * 109.47064 * 300.00293 * 1 2 3 24 24 H 1.09000 * 109.46531 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46832 * 60.00370 * 1 2 3 26 26 H 1.08006 * 124.56321 * 180.02562 * 9 8 7 27 27 H 1.07999 * 122.35987 * 179.97438 * 10 9 8 28 28 H 0.97008 * 119.99870 * 179.97438 * 15 14 12 29 29 H 0.96999 * 120.00228 * 0.02562 * 21 20 2 30 30 H 0.96998 * 120.00085 * 180.02562 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2106 0.0793 2.2686 6 8 1.9901 1.2756 2.2377 7 6 2.6830 -0.5236 3.4615 8 16 3.0489 -2.2313 3.6655 9 6 3.5173 -1.9780 5.3394 10 6 3.3943 -0.6988 5.6769 11 6 2.9387 0.1449 4.6611 12 6 2.7526 1.5273 4.8303 13 1 2.8004 2.1870 3.9765 14 6 2.5046 2.0507 6.1085 15 7 2.2522 1.2460 7.1060 16 14 2.5354 3.8981 6.3835 17 1 1.1760 4.4539 6.1638 18 1 2.9683 4.1843 7.7748 19 1 3.4863 4.5245 5.4303 20 6 2.0325 -0.7103 -1.2304 21 7 1.7920 -0.1942 -2.4520 22 8 2.6531 -1.7466 -1.1214 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 3.8601 -2.7570 6.0044 27 1 3.6329 -0.3363 6.6658 28 1 2.0811 1.6078 7.9897 29 1 1.2958 0.6347 -2.5392 30 1 2.1151 -0.6516 -3.2440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:03 Heat of formation + Delta-G solvation = -130.646194 kcal Electronic energy + Delta-G solvation = -18088.801257 eV Core-core repulsion = 14974.374442 eV Total energy + Delta-G solvation = -3114.426815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.055 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53624 -40.16883 -38.58551 -36.85756 -35.10361 -35.00189 -32.48368 -30.94473 -28.67731 -25.98444 -24.51309 -22.68567 -21.33561 -20.69415 -19.66722 -18.94617 -18.03692 -17.55113 -17.24774 -16.97006 -16.62316 -15.96021 -15.63027 -15.35953 -14.63291 -14.27699 -14.20095 -13.89120 -13.70947 -13.38394 -13.17564 -12.99601 -12.82790 -12.58893 -12.21990 -12.02972 -11.66329 -11.46112 -11.12960 -10.95916 -10.79784 -10.76435 -9.45469 -9.12413 -8.97890 -6.63586 0.04969 1.33162 1.34717 1.36966 1.43061 1.50739 1.76267 1.78336 1.89299 2.14258 2.30551 2.76306 3.20491 3.79159 3.86849 3.99571 4.37452 4.47098 4.66697 4.86923 4.98744 5.08436 5.12764 5.32827 5.55886 5.62402 5.80524 5.83869 6.28013 6.32298 6.46558 6.61631 7.22329 7.37761 7.94626 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.006346 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.938804 B = 4411.416748 C = 5461.520257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 H 0.104 0.896 4 O -0.356 6.356 5 C 0.527 3.473 6 O -0.571 6.571 7 C -0.456 4.456 8 S 0.002 5.998 9 C -0.179 4.179 10 C -0.133 4.133 11 C 0.117 3.883 12 C -0.388 4.388 13 H 0.093 0.907 14 C 0.033 3.967 15 N -0.774 5.774 16 Si 0.997 3.003 17 H -0.260 1.260 18 H -0.247 1.247 19 H -0.260 1.260 20 C 0.525 3.475 21 N -0.818 5.818 22 O -0.574 6.574 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.182 0.818 27 H 0.148 0.852 28 H 0.308 0.692 29 H 0.421 0.579 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 2.499 -7.360 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 H 0.122 0.878 4 O -0.274 6.274 5 C 0.386 3.614 6 O -0.471 6.471 7 C -0.572 4.572 8 S 0.258 5.742 9 C -0.314 4.314 10 C -0.165 4.165 11 C 0.106 3.894 12 C -0.417 4.417 13 H 0.111 0.889 14 C -0.189 4.189 15 N -0.397 5.397 16 Si 0.815 3.185 17 H -0.185 1.185 18 H -0.170 1.170 19 H -0.184 1.184 20 C 0.309 3.691 21 N -0.386 5.386 22 O -0.453 6.453 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.137 0.863 26 H 0.199 0.801 27 H 0.165 0.835 28 H 0.120 0.880 29 H 0.253 0.747 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.559 0.867 -7.836 8.289 hybrid contribution -0.088 1.910 0.675 2.028 sum -2.647 2.778 -7.161 8.124 Atomic orbital electron populations 1.22141 0.90464 1.03642 1.04896 1.22160 0.97463 0.97640 0.83039 0.87822 1.86321 1.79186 1.41958 1.19951 1.18378 0.76123 0.84499 0.82438 1.90641 1.55904 1.16298 1.84212 1.21402 1.40048 0.96450 0.99254 1.83261 1.74228 1.08347 1.08335 1.25728 1.06251 1.00435 0.98946 1.20559 1.02392 0.92801 1.00775 1.17346 0.88324 0.94471 0.89221 1.20302 1.33346 0.92814 0.95276 0.88855 1.27221 0.90905 1.06889 0.93923 1.69636 1.26642 1.40469 1.02997 0.84970 0.80162 0.73877 0.79475 1.18498 1.16979 1.18421 1.20282 0.78530 0.84395 0.85889 1.43374 1.59422 1.29681 1.06100 1.90749 1.41719 1.25474 1.87335 0.92424 0.91661 0.86278 0.80092 0.83490 0.88022 0.74668 0.75006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.48 71.98 0.68 -3.65 16 2 C 0.06 2.02 2.93 29.85 0.09 2.11 16 3 H 0.10 3.65 7.11 -2.38 -0.02 3.63 16 4 O -0.36 -17.16 9.06 -52.75 -0.48 -17.64 16 5 C 0.53 28.34 7.69 68.69 0.53 28.87 16 6 O -0.57 -31.46 13.57 19.22 0.26 -31.20 16 7 C -0.46 -25.04 6.36 23.49 0.15 -24.89 16 8 S 0.00 0.10 23.02 -56.49 -1.30 -1.20 16 9 C -0.18 -7.79 11.11 66.64 0.74 -7.05 16 10 C -0.13 -6.49 8.81 21.44 0.19 -6.30 16 11 C 0.12 6.42 5.53 -22.03 -0.12 6.30 16 12 C -0.39 -20.82 8.40 23.33 0.20 -20.63 16 13 H 0.09 5.27 6.07 -2.91 -0.02 5.25 16 14 C 0.03 1.54 5.37 85.38 0.46 1.99 16 15 N -0.77 -35.40 10.87 21.89 0.24 -35.16 16 16 Si 1.00 35.27 29.57 68.60 2.03 37.30 16 17 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 18 H -0.25 -7.68 7.11 99.48 0.71 -6.98 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 20 C 0.53 16.86 7.45 87.66 0.65 17.51 16 21 N -0.82 -14.63 8.84 -173.53 -1.53 -16.16 16 22 O -0.57 -24.52 17.34 15.95 0.28 -24.25 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.12 2.07 7.92 -2.39 -0.02 2.05 16 26 H 0.18 6.22 8.06 -2.91 -0.02 6.20 16 27 H 0.15 6.95 6.37 -2.91 -0.02 6.94 16 28 H 0.31 12.14 8.29 -92.70 -0.77 11.37 16 29 H 0.42 4.36 8.61 -92.71 -0.80 3.57 16 30 H 0.42 5.93 8.93 -92.71 -0.83 5.10 16 Total: -1.00 -73.00 284.37 2.65 -70.36 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.41 Total: 23.71 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 3.56 Total: -5.75 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -1.30 Total: -51.32 kcal Atomic # 8 Polarization: -73.15 SS G_CDS: 0.06 Total: -73.09 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.30 Total: -1.20 kcal Total: -73.00 2.65 -70.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.289 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds