Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 119.99975 * 2 1 4 4 C 1.38207 * 119.99772 * 180.27729 * 3 2 1 5 5 C 1.38255 * 120.00465 * 359.74604 * 4 3 2 6 6 C 1.38220 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00429 * 179.74937 * 2 1 3 8 8 C 1.50702 * 119.99663 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47040 * 184.43843 * 8 7 2 10 10 C 1.46507 * 119.99659 * 274.38864 * 9 8 7 11 11 S 1.65594 * 120.00529 * 94.38945 * 9 8 7 12 12 O 1.42095 * 106.40725 * 203.54081 * 11 9 8 13 13 O 1.42104 * 106.40128 * 336.46468 * 11 9 8 14 14 C 1.76200 * 107.21677 * 89.99897 * 11 9 8 15 15 H 1.08002 * 120.00485 * 0.02562 * 14 11 9 16 16 C 1.37880 * 119.99966 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00164 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 119.99956 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47405 * 90.00378 * 18 16 14 20 20 H 1.48509 * 109.46907 * 210.00297 * 18 16 14 21 21 H 1.48499 * 109.47182 * 329.99627 * 18 16 14 22 22 H 1.09002 * 109.46640 * 264.73272 * 1 2 3 23 23 H 1.08998 * 109.47443 * 24.73080 * 1 2 3 24 24 H 1.08995 * 109.47009 * 144.73551 * 1 2 3 25 25 H 1.07997 * 119.99635 * 0.04483 * 3 2 1 26 26 H 1.08000 * 119.99944 * 179.76817 * 4 3 2 27 27 H 1.08002 * 120.00465 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.00282 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47285 * 64.43509 * 8 7 2 30 30 H 1.09003 * 109.46762 * 304.43422 * 8 7 2 31 31 H 1.09003 * 109.47308 * 274.59125 * 10 9 8 32 32 H 1.09005 * 109.47075 * 34.59493 * 10 9 8 33 33 H 1.09001 * 109.47282 * 154.59410 * 10 9 8 34 34 H 0.97001 * 120.00426 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0063 6 6 3.5807 -1.1969 -0.0004 7 6 2.1982 -1.1969 0.0052 8 6 1.4447 -2.5020 0.0115 9 7 2.3931 -3.6129 0.1232 10 6 3.0254 -4.1599 -1.0800 11 16 2.7507 -4.2504 1.6091 12 8 4.0251 -4.8665 1.4854 13 8 2.4680 -3.2334 2.5605 14 6 1.5978 -5.5483 1.9109 15 1 0.8437 -5.7829 1.1742 16 6 1.6584 -6.2644 3.0876 17 7 0.7976 -7.2328 3.3131 18 14 2.9623 -5.8582 4.3620 19 1 2.4350 -4.8361 5.3014 20 1 3.3172 -7.0873 5.1162 21 1 4.1714 -5.3285 3.6818 22 1 -0.3633 -0.0943 1.0234 23 1 -0.3634 0.9334 -0.4299 24 1 -0.3633 -0.8390 -0.5933 25 1 1.6583 2.1327 0.0007 26 1 4.1204 2.1327 -0.0096 27 1 5.3517 0.0001 -0.0112 28 1 4.1206 -2.1322 -0.0012 29 1 0.8786 -2.5992 -0.9148 30 1 0.7601 -2.5222 0.8595 31 1 2.3710 -4.9091 -1.5257 32 1 3.1992 -3.3568 -1.7962 33 1 3.9764 -4.6209 -0.8131 34 1 0.8405 -7.7369 4.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = -52.873435 kcal Electronic energy + Delta-G solvation = -19055.762187 eV Core-core repulsion = 16080.540946 eV Total energy + Delta-G solvation = -2975.221240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.41420 -35.75223 -35.68868 -34.42677 -33.03423 -32.79301 -30.81780 -27.47157 -26.45025 -26.33567 -24.25495 -21.67613 -20.59865 -18.70329 -17.44830 -16.73873 -16.33409 -15.67460 -15.20628 -14.86369 -14.35148 -14.04266 -13.85581 -13.31257 -13.24688 -12.90628 -12.82699 -12.53676 -12.38881 -12.17241 -11.93739 -11.65310 -11.37762 -11.15863 -10.88933 -10.83439 -10.70309 -10.59083 -10.40202 -9.83762 -9.21820 -9.15869 -8.56397 -8.36190 -8.31146 -6.81355 -5.35092 1.56280 1.61996 1.99254 3.06277 3.17206 3.26219 3.94599 3.96000 4.14181 4.58054 4.97384 5.00550 5.13559 5.25955 5.37243 5.41188 5.48013 5.56121 5.69233 5.77837 5.81238 5.86936 5.96509 6.05915 6.12556 6.21950 6.27107 6.31891 6.50567 6.67624 6.73217 6.88590 7.22709 7.35677 7.47607 8.20332 8.69700 10.31042 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.006702 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.807550 B = 4177.010101 C = 4277.428269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.088 4.088 8 C 0.168 3.832 9 N -1.004 6.004 10 C 0.088 3.912 11 S 2.673 3.327 12 O -1.007 7.007 13 O -1.002 7.002 14 C -1.017 5.017 15 H 0.121 0.879 16 C 0.153 3.847 17 N -0.823 5.823 18 Si 0.800 3.200 19 H -0.245 1.245 20 H -0.254 1.254 21 H -0.220 1.220 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 12.314 -8.351 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.124 4.124 7 C -0.090 4.090 8 C 0.042 3.958 9 N -0.839 5.839 10 C -0.057 4.057 11 S 2.775 3.225 12 O -0.997 6.997 13 O -0.992 6.992 14 C -1.151 5.151 15 H 0.139 0.861 16 C -0.066 4.066 17 N -0.452 5.452 18 Si 0.620 3.380 19 H -0.169 1.169 20 H -0.178 1.178 21 H -0.142 1.142 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.911 12.457 -7.739 14.789 hybrid contribution -0.053 -0.434 0.488 0.655 sum 1.858 12.023 -7.251 14.163 Atomic orbital electron populations 1.20832 0.91267 1.02500 1.02846 1.19670 0.95995 0.92414 1.00395 1.20930 0.94213 0.97090 1.01742 1.21034 0.94334 0.97705 1.01463 1.21113 0.99693 0.92562 1.00978 1.21084 0.93973 0.98269 0.99107 1.20333 0.94416 0.95142 0.99121 1.20040 0.90482 0.81983 1.03330 1.57405 1.57275 1.45153 1.24095 1.21471 0.98470 0.98433 0.87368 1.01578 0.75090 0.75006 0.70833 1.93444 1.43143 1.77800 1.85316 1.93423 1.86548 1.60520 1.58700 1.30539 1.34681 1.36385 1.13488 0.86098 1.24433 0.93992 0.91871 0.96351 1.69988 1.32689 1.17194 1.25356 0.87890 0.84108 0.81380 0.84663 1.16918 1.17816 1.14188 0.90675 0.91813 0.91242 0.86377 0.86521 0.86365 0.86048 0.89619 0.88354 0.92992 0.92035 0.89915 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.44 36.01 0.34 -1.01 16 2 C -0.08 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.12 -1.58 9.68 -39.58 -0.38 -1.97 16 4 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 16 5 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 6 C -0.11 -1.80 9.00 -39.58 -0.36 -2.16 16 7 C -0.09 -1.47 5.88 -104.62 -0.61 -2.08 16 8 C 0.17 2.85 4.45 -5.19 -0.02 2.83 16 9 N -1.00 -19.67 2.01 -123.05 -0.25 -19.92 16 10 C 0.09 1.43 9.60 59.85 0.57 2.00 16 11 S 2.67 67.57 4.14 -107.50 -0.45 67.13 16 12 O -1.01 -26.99 14.58 -57.17 -0.83 -27.82 16 13 O -1.00 -26.94 15.81 -57.17 -0.90 -27.85 16 14 C -1.02 -28.62 10.29 30.60 0.31 -28.31 16 15 H 0.12 3.43 8.06 -52.49 -0.42 3.00 16 16 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 17 N -0.82 -23.91 13.96 55.43 0.77 -23.13 16 18 Si 0.80 20.80 26.54 -169.99 -4.51 16.29 16 19 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 24 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 25 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.12 2.14 6.17 -52.49 -0.32 1.82 16 29 H 0.09 1.17 7.69 -51.93 -0.40 0.77 16 30 H 0.10 1.76 7.53 -51.93 -0.39 1.37 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 33 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 34 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -33.14 294.73 -7.80 -40.95 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.42 Total: 2.39 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -1.66 Total: -32.46 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.53 Total: -43.05 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -1.74 Total: -55.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.51 Total: 16.29 kcal Atomic # 16 Polarization: 67.57 SS G_CDS: -0.45 Total: 67.13 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.14 -7.80 -40.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.928 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds