Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38266 * 119.99975 * 2 1 4 4 C 1.38207 * 119.99772 * 180.27729 * 3 2 1 5 5 C 1.38255 * 120.00465 * 359.74604 * 4 3 2 6 6 C 1.38220 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00429 * 179.74937 * 2 1 3 8 8 C 1.50702 * 119.99663 * 359.97438 * 7 2 1 9 9 N 1.46498 * 109.47040 * 184.43843 * 8 7 2 10 10 C 1.46507 * 119.99659 * 274.38864 * 9 8 7 11 11 S 1.65594 * 120.00529 * 94.38945 * 9 8 7 12 12 O 1.42095 * 106.40725 * 203.54081 * 11 9 8 13 13 O 1.42104 * 106.40128 * 336.46468 * 11 9 8 14 14 C 1.76200 * 107.21677 * 89.99897 * 11 9 8 15 15 H 1.08002 * 120.00485 * 0.02562 * 14 11 9 16 16 C 1.37880 * 119.99966 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00164 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 119.99956 * 0.02562 * 16 14 11 19 19 H 1.48495 * 109.47405 * 90.00378 * 18 16 14 20 20 H 1.48509 * 109.46907 * 210.00297 * 18 16 14 21 21 H 1.48499 * 109.47182 * 329.99627 * 18 16 14 22 22 H 1.09002 * 109.46640 * 264.73272 * 1 2 3 23 23 H 1.08998 * 109.47443 * 24.73080 * 1 2 3 24 24 H 1.08995 * 109.47009 * 144.73551 * 1 2 3 25 25 H 1.07997 * 119.99635 * 0.04483 * 3 2 1 26 26 H 1.08000 * 119.99944 * 179.76817 * 4 3 2 27 27 H 1.08002 * 120.00465 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.00282 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47285 * 64.43509 * 8 7 2 30 30 H 1.09003 * 109.46762 * 304.43422 * 8 7 2 31 31 H 1.09003 * 109.47308 * 274.59125 * 10 9 8 32 32 H 1.09005 * 109.47075 * 34.59493 * 10 9 8 33 33 H 1.09001 * 109.47282 * 154.59410 * 10 9 8 34 34 H 0.97001 * 120.00426 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0063 6 6 3.5807 -1.1969 -0.0004 7 6 2.1982 -1.1969 0.0052 8 6 1.4447 -2.5020 0.0115 9 7 2.3931 -3.6129 0.1232 10 6 3.0254 -4.1599 -1.0800 11 16 2.7507 -4.2504 1.6091 12 8 4.0251 -4.8665 1.4854 13 8 2.4680 -3.2334 2.5605 14 6 1.5978 -5.5483 1.9109 15 1 0.8437 -5.7829 1.1742 16 6 1.6584 -6.2644 3.0876 17 7 0.7976 -7.2328 3.3131 18 14 2.9623 -5.8582 4.3620 19 1 2.4350 -4.8361 5.3014 20 1 3.3172 -7.0873 5.1162 21 1 4.1714 -5.3285 3.6818 22 1 -0.3633 -0.0943 1.0234 23 1 -0.3634 0.9334 -0.4299 24 1 -0.3633 -0.8390 -0.5933 25 1 1.6583 2.1327 0.0007 26 1 4.1204 2.1327 -0.0096 27 1 5.3517 0.0001 -0.0112 28 1 4.1206 -2.1322 -0.0012 29 1 0.8786 -2.5992 -0.9148 30 1 0.7601 -2.5222 0.8595 31 1 2.3710 -4.9091 -1.5257 32 1 3.1992 -3.3568 -1.7962 33 1 3.9764 -4.6209 -0.8131 34 1 0.8405 -7.7369 4.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = -75.396001 kcal Electronic energy + Delta-G solvation = -19056.738839 eV Core-core repulsion = 16080.540946 eV Total energy + Delta-G solvation = -2976.197892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52305 -37.76226 -37.13427 -36.50488 -35.21300 -33.83345 -31.98984 -28.67697 -28.55896 -27.44822 -25.63906 -22.83490 -21.70877 -20.72078 -19.29260 -18.67475 -17.55321 -17.23368 -17.03863 -16.10562 -15.70486 -15.65435 -15.20754 -15.10563 -14.76500 -14.73557 -14.07631 -13.87715 -13.61534 -13.48609 -13.21716 -13.13947 -13.02903 -12.85655 -12.65780 -12.55165 -12.37832 -11.90350 -11.88152 -11.76085 -11.37408 -11.21396 -9.93608 -9.64699 -9.41001 -9.00311 -7.55954 0.06830 0.48346 0.51970 1.00696 1.10152 1.17445 1.85449 2.36968 2.40906 2.87797 3.34737 3.86843 3.90751 4.00846 4.06504 4.13288 4.23692 4.47037 4.50925 4.58073 4.69964 4.76659 4.87751 4.91003 4.95558 5.00893 5.05177 5.19918 5.35228 5.38811 5.60071 5.65245 5.68433 5.91972 5.97930 6.18663 6.50010 8.17549 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.006702 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.807550 B = 4177.010101 C = 4277.428269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.136 4.136 7 C -0.113 4.113 8 C 0.162 3.838 9 N -0.999 5.999 10 C 0.081 3.919 11 S 2.692 3.308 12 O -1.027 7.027 13 O -1.022 7.022 14 C -1.039 5.039 15 H 0.106 0.894 16 C 0.109 3.891 17 N -0.852 5.852 18 Si 0.821 3.179 19 H -0.239 1.239 20 H -0.216 1.216 21 H -0.231 1.231 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 14.343 -9.053 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.114 4.114 8 C 0.037 3.963 9 N -0.838 5.838 10 C -0.063 4.063 11 S 2.793 3.207 12 O -1.017 7.017 13 O -1.012 7.012 14 C -1.172 5.172 15 H 0.124 0.876 16 C -0.108 4.108 17 N -0.482 5.482 18 Si 0.638 3.362 19 H -0.162 1.162 20 H -0.138 1.138 21 H -0.154 1.154 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.167 0.833 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.970 14.454 -8.426 16.846 hybrid contribution -0.110 -0.976 0.592 1.147 sum 1.860 13.478 -7.834 15.700 Atomic orbital electron populations 1.20906 0.89457 1.04290 1.02882 1.20026 0.97500 0.92099 0.99682 1.21372 0.94512 0.97882 1.00218 1.21447 0.94719 0.98325 0.99755 1.21387 1.00742 0.92504 1.00915 1.21147 0.94455 0.98612 1.01249 1.20379 0.94471 0.95570 1.01015 1.20281 0.90059 0.81553 1.04393 1.56993 1.58060 1.45541 1.23158 1.21729 0.98028 0.99985 0.86570 1.00774 0.74008 0.73966 0.71951 1.93405 1.43648 1.78421 1.86228 1.93381 1.86640 1.60404 1.60787 1.31071 1.35241 1.37608 1.13263 0.87553 1.25149 0.95564 0.92088 0.97984 1.70005 1.33734 1.17895 1.26561 0.87554 0.81985 0.83139 0.83566 1.16184 1.13793 1.15377 0.91221 0.89166 0.90613 0.83183 0.83346 0.84808 0.87796 0.86194 0.89912 0.91479 0.88680 0.91050 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 9.44 71.24 0.67 -1.76 16 2 C -0.09 -2.45 5.88 -19.86 -0.12 -2.57 16 3 C -0.12 -2.78 9.68 22.27 0.22 -2.56 16 4 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 5 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 6 C -0.14 -4.55 9.00 22.27 0.20 -4.35 16 7 C -0.11 -3.62 5.88 -19.87 -0.12 -3.74 16 8 C 0.16 5.40 4.45 85.63 0.38 5.79 16 9 N -1.00 -39.02 2.01 -543.20 -1.09 -40.11 16 10 C 0.08 2.56 9.60 127.77 1.23 3.79 16 11 S 2.69 137.86 4.14 -56.49 -0.23 137.62 16 12 O -1.03 -55.80 14.58 -128.00 -1.87 -57.67 16 13 O -1.02 -55.69 15.81 -128.00 -2.02 -57.71 16 14 C -1.04 -59.75 10.29 67.73 0.70 -59.06 16 15 H 0.11 6.22 8.06 -2.91 -0.02 6.20 16 16 C 0.11 6.39 5.47 84.66 0.46 6.85 16 17 N -0.85 -49.90 13.96 21.45 0.30 -49.60 16 18 Si 0.82 41.90 26.54 68.60 1.82 43.72 16 19 H -0.24 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.22 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.23 -12.20 5.61 99.48 0.56 -11.65 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 24 H 0.08 1.42 6.99 -2.39 -0.02 1.41 16 25 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 26 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.10 3.72 6.17 -2.91 -0.02 3.70 16 29 H 0.12 3.06 7.69 -2.39 -0.02 3.04 16 30 H 0.08 2.98 7.53 -2.39 -0.02 2.96 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.35 7.91 -2.38 -0.02 2.34 16 33 H 0.07 2.41 6.92 -2.39 -0.02 2.39 16 34 H 0.29 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.03 294.73 1.92 -70.11 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.94 Total: 17.46 kcal Atomic # 6 Polarization: -67.90 SS G_CDS: 4.07 Total: -63.83 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -0.79 Total: -89.71 kcal Atomic # 8 Polarization: -111.49 SS G_CDS: -3.89 Total: -115.38 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.82 Total: 43.72 kcal Atomic # 16 Polarization: 137.86 SS G_CDS: -0.23 Total: 137.62 kcal Total: -72.03 1.92 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.287 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds