Wall clock time and date at job start Mon Mar 30 2020 00:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21521 * 119.99995 * 0.02562 * 14 13 3 16 16 C 1.48101 * 119.99790 * 180.02562 * 14 13 3 17 17 C 1.39791 * 120.16439 * 179.72069 * 16 14 13 18 18 C 1.38723 * 117.91508 * 179.78337 * 17 16 14 19 19 C 1.38760 * 118.05860 * 0.48710 * 18 17 16 20 20 Cl 1.73603 * 119.98044 * 179.76937 * 19 18 17 21 21 N 1.32296 * 120.03730 * 359.74919 * 19 18 17 22 22 N 1.28349 * 122.27693 * 359.97438 * 21 19 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.07999 * 121.04392 * 0.02562 * 17 16 14 31 31 H 1.07994 * 120.96849 * 180.23710 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3407 2.6326 -0.4322 16 6 0.0433 3.3261 -2.6325 17 6 -1.2206 3.9101 -2.7577 18 6 -1.5372 4.5213 -3.9622 19 6 -0.5851 4.5068 -4.9715 20 17 -0.9310 5.2516 -6.5010 21 7 0.5861 3.9260 -4.7688 22 7 0.8885 3.3632 -3.6557 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0605 2.9503 29 1 2.2720 2.1232 -1.9977 30 1 -1.9270 3.8896 -1.9410 31 1 -2.4981 4.9911 -4.1112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:54 Heat of formation + Delta-G solvation = 10.425332 kcal Electronic energy + Delta-G solvation = -17892.877374 eV Core-core repulsion = 14814.816924 eV Total energy + Delta-G solvation = -3078.060450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31303 -38.97742 -37.19368 -35.27878 -33.50066 -32.91929 -32.15284 -30.80309 -27.22390 -25.42918 -24.81606 -23.05495 -21.11543 -19.55616 -18.47097 -17.67988 -17.39772 -16.03069 -15.71676 -15.36394 -14.68820 -14.47936 -14.35150 -13.84246 -13.27636 -12.73668 -12.58088 -12.07461 -11.99664 -11.80177 -11.58936 -11.29348 -11.00926 -10.87389 -10.59789 -10.37355 -10.26193 -10.01997 -9.88537 -9.70277 -9.43989 -9.11398 -8.54231 -7.97992 -6.15606 -4.24930 0.17905 0.43938 1.26079 2.74161 3.25036 3.31734 3.34093 3.49914 3.71768 3.88753 4.15215 4.32749 4.41711 4.55333 4.91676 5.16467 5.36711 5.49914 5.75338 6.32527 6.37911 6.57163 6.97048 7.09450 7.21680 7.30323 7.54065 7.66721 7.81783 8.10700 8.18718 8.50721 8.66953 8.91681 9.41968 10.89868 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.030481 B = 0.004336 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.376187 B = 6455.575523 C = 7106.643820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.556 3.444 15 O -0.534 6.534 16 C 0.040 3.960 17 C -0.054 4.054 18 C -0.112 4.112 19 C 0.117 3.883 20 Cl -0.007 7.007 21 N -0.229 5.229 22 N -0.189 5.189 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.103 0.897 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.173 0.827 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 7.167 -12.132 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.322 5.322 14 C 0.336 3.664 15 O -0.411 6.411 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.141 4.141 19 C -0.053 4.053 20 Cl 0.021 6.979 21 N -0.075 5.075 22 N -0.036 5.036 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.121 0.879 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.236 0.764 30 H 0.191 0.809 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.872 6.668 -11.961 16.317 hybrid contribution -0.192 0.480 0.043 0.519 sum -9.064 7.148 -11.917 16.591 Atomic orbital electron populations 1.21855 0.98378 0.98314 1.01047 1.21956 0.92586 0.99508 1.02706 1.18967 0.94711 0.89361 0.80337 0.92852 1.21223 0.90416 1.39258 1.06508 0.91773 1.24869 0.98762 0.94626 0.95280 1.69886 1.35236 1.37563 1.09315 0.86423 0.84637 0.77639 0.78311 1.20538 1.21055 1.19703 1.46520 1.13658 1.52926 1.19140 1.17433 0.84005 0.80168 0.84773 1.90791 1.51692 1.60379 1.38231 1.23567 0.92885 0.97452 0.96734 1.22551 0.96482 0.91491 0.97813 1.22225 1.00899 0.99092 0.91919 1.23663 0.93976 0.97352 0.90312 1.98427 1.93553 1.78931 1.26986 1.73084 1.14735 1.05397 1.14245 1.73432 1.26455 1.08947 0.94744 0.94587 0.92974 0.95571 0.87921 0.94705 0.92495 0.76437 0.80926 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.57 2.24 -69.09 -0.15 6.41 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.68 -14.14 5.01 -55.80 -0.28 -14.42 16 14 C 0.56 10.76 6.38 -12.21 -0.08 10.68 16 15 O -0.53 -11.39 13.53 5.35 0.07 -11.32 16 16 C 0.04 0.64 6.83 -82.84 -0.57 0.07 16 17 C -0.05 -0.65 9.73 -38.82 -0.38 -1.02 16 18 C -0.11 -1.08 9.99 -39.21 -0.39 -1.47 16 19 C 0.12 1.37 7.37 -17.16 -0.13 1.25 16 20 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 16 21 N -0.23 -3.40 11.50 32.93 0.38 -3.02 16 22 N -0.19 -3.06 10.74 33.32 0.36 -2.71 16 23 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 24 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 7.87 7.89 -40.82 -0.32 7.55 16 30 H 0.17 1.78 7.72 -52.49 -0.41 1.38 16 31 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -28.71 285.60 -5.93 -34.64 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.94 Total: 4.72 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.92 Total: -2.51 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 1.08 Total: -43.69 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.71 -5.93 -34.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.065 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds