Wall clock time and date at job start Mon Mar 30 2020 00:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21521 * 119.99995 * 0.02562 * 14 13 3 16 16 C 1.48101 * 119.99790 * 180.02562 * 14 13 3 17 17 C 1.39791 * 120.16439 * 179.72069 * 16 14 13 18 18 C 1.38723 * 117.91508 * 179.78337 * 17 16 14 19 19 C 1.38760 * 118.05860 * 0.48710 * 18 17 16 20 20 Cl 1.73603 * 119.98044 * 179.76937 * 19 18 17 21 21 N 1.32296 * 120.03730 * 359.74919 * 19 18 17 22 22 N 1.28349 * 122.27693 * 359.97438 * 21 19 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.07999 * 121.04392 * 0.02562 * 17 16 14 31 31 H 1.07994 * 120.96849 * 180.23710 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3407 2.6326 -0.4322 16 6 0.0433 3.3261 -2.6325 17 6 -1.2206 3.9101 -2.7577 18 6 -1.5372 4.5213 -3.9622 19 6 -0.5851 4.5068 -4.9715 20 17 -0.9310 5.2516 -6.5010 21 7 0.5861 3.9260 -4.7688 22 7 0.8885 3.3632 -3.6557 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0605 2.9503 29 1 2.2720 2.1232 -1.9977 30 1 -1.9270 3.8896 -1.9410 31 1 -2.4981 4.9911 -4.1112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:53 Heat of formation + Delta-G solvation = -9.168262 kcal Electronic energy + Delta-G solvation = -17893.727016 eV Core-core repulsion = 14814.816924 eV Total energy + Delta-G solvation = -3078.910092 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.40803 -40.53280 -38.05933 -37.07453 -34.61642 -34.36087 -33.72503 -32.48705 -29.08229 -26.68242 -25.87444 -24.87971 -22.65074 -21.34258 -19.92367 -18.84847 -18.43335 -17.75864 -17.20083 -16.87489 -16.31206 -15.97525 -15.58548 -15.04744 -14.62989 -14.53083 -13.98370 -13.54917 -13.25551 -13.20407 -13.05963 -12.90995 -12.69332 -12.65630 -12.17593 -12.08603 -11.61394 -11.52961 -11.09660 -11.08126 -10.98577 -10.90593 -10.54055 -9.75091 -8.17113 -6.33785 -0.87963 -0.50127 0.36373 1.45467 1.46095 1.51010 1.56927 2.11230 2.41047 2.44455 2.78827 3.12598 3.18006 3.48473 3.60624 3.74152 4.30399 4.49854 4.56629 4.62459 4.74040 4.78693 5.05130 5.24882 5.40987 5.46650 5.58427 5.76073 5.85472 6.14131 6.70764 6.74908 7.15621 7.23121 7.40126 8.88190 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.030481 B = 0.004336 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.376187 B = 6455.575523 C = 7106.643820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.012 0.988 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.559 3.441 15 O -0.558 6.558 16 C 0.021 3.979 17 C -0.049 4.049 18 C -0.083 4.083 19 C 0.116 3.884 20 Cl 0.018 6.982 21 N -0.255 5.255 22 N -0.211 5.211 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.191 0.809 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 8.112 -13.840 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.030 0.970 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.329 5.329 14 C 0.341 3.659 15 O -0.436 6.436 16 C -0.126 4.126 17 C -0.078 4.078 18 C -0.112 4.112 19 C -0.054 4.054 20 Cl 0.046 6.954 21 N -0.101 5.101 22 N -0.058 5.058 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.242 0.758 30 H 0.208 0.792 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.830 7.628 -13.704 18.510 hybrid contribution -0.003 0.290 0.452 0.537 sum -9.834 7.918 -13.252 18.304 Atomic orbital electron populations 1.21698 0.96586 0.99539 1.00427 1.21806 0.94141 0.98725 1.01512 1.18558 0.93921 0.89512 0.80671 0.97025 1.21542 0.91405 1.39331 1.06816 0.91515 1.25677 1.03121 0.94196 0.94917 1.70016 1.36975 1.38126 1.09751 0.85411 0.79322 0.77568 0.78463 1.20319 1.20672 1.18921 1.46299 1.14794 1.53731 1.18114 1.17823 0.82909 0.79252 0.85878 1.90766 1.52137 1.61092 1.39643 1.23056 0.94829 0.99425 0.95259 1.22763 0.95030 0.90717 0.99307 1.22696 1.01934 0.96868 0.89734 1.24000 0.93460 0.96225 0.91708 1.98444 1.93222 1.78224 1.25512 1.72994 1.16684 1.06656 1.13747 1.73344 1.27310 1.09933 0.95256 0.94030 0.94656 0.93332 0.90447 0.94334 0.92429 0.75785 0.79208 0.76823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.05 2.24 44.24 0.10 14.15 16 4 H 0.01 0.70 7.58 -2.39 -0.02 0.68 16 5 C -0.55 -29.51 8.73 25.60 0.22 -29.28 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -51.12 11.29 21.45 0.24 -50.88 16 9 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 N -0.68 -29.29 5.01 -448.75 -2.25 -31.54 16 14 C 0.56 21.91 6.38 86.86 0.55 22.47 16 15 O -0.56 -24.18 13.53 -3.78 -0.05 -24.23 16 16 C 0.02 0.65 6.83 42.00 0.29 0.94 16 17 C -0.05 -1.06 9.73 22.76 0.22 -0.84 16 18 C -0.08 -1.29 9.99 22.51 0.22 -1.07 16 19 C 0.12 2.40 7.37 84.75 0.62 3.03 16 20 Cl 0.02 0.28 29.13 -2.72 -0.08 0.20 16 21 N -0.26 -7.24 11.50 -49.74 -0.57 -7.81 16 22 N -0.21 -6.77 10.74 -48.49 -0.52 -7.29 16 23 H 0.04 1.72 5.65 -2.39 -0.01 1.70 16 24 H 0.03 1.61 7.84 -2.39 -0.02 1.59 16 25 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.08 4.17 5.95 -2.39 -0.01 4.16 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.41 16.39 7.89 -92.71 -0.73 15.66 16 30 H 0.19 3.41 7.72 -2.91 -0.02 3.38 16 31 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -63.90 285.60 2.70 -61.20 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.45 Total: 15.69 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 3.46 Total: 0.40 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.10 Total: -97.52 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -63.90 2.70 -61.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.027 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds