Wall clock time and date at job start Mon Mar 30 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 S 1.65595 * 120.00371 * 165.00045 * 10 9 8 12 12 O 1.42092 * 106.40125 * 178.54095 * 11 10 9 13 13 O 1.42101 * 106.39830 * 311.45771 * 11 10 9 14 14 C 1.76196 * 107.21794 * 64.99598 * 11 10 9 15 15 H 1.07999 * 120.00137 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00088 * 180.02562 * 14 11 10 17 17 N 1.31521 * 119.99525 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00289 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47109 * 60.00109 * 18 16 14 20 20 H 1.48495 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46953 * 300.00321 * 18 16 14 22 22 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 23 23 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 24 24 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 25 25 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 29 29 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 30 30 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 31 31 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 32 32 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 33 33 H 0.97002 * 119.99329 * 345.00099 * 10 9 8 34 34 H 0.96999 * 119.99771 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 16 -0.4879 -4.6232 -2.7846 12 8 -1.0507 -5.8925 -2.4826 13 8 -1.2657 -3.5039 -3.1865 14 6 0.6927 -4.8939 -4.0641 15 1 1.7442 -4.7424 -3.8696 16 6 0.2742 -5.2993 -5.3138 17 7 -1.0063 -5.4834 -5.5508 18 14 1.5259 -5.5871 -6.6702 19 1 2.4772 -6.6468 -6.2492 20 1 0.8253 -6.0147 -7.9077 21 1 2.2703 -4.3291 -6.9317 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6582 2.1327 -0.0004 26 1 4.1203 2.1329 0.0001 27 1 5.3517 0.0002 0.0005 28 1 4.1207 -2.1321 0.0064 29 1 2.0693 -3.2822 0.4356 30 1 0.5336 -2.3956 0.5893 31 1 0.4571 -2.1013 -1.8716 32 1 1.9929 -2.9879 -2.0253 33 1 0.3560 -4.7139 -0.6470 34 1 -1.3008 -5.7682 -6.4300 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112799827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:59 Heat of formation + Delta-G solvation = -85.722044 kcal Electronic energy + Delta-G solvation = -18209.849866 eV Core-core repulsion = 15233.204203 eV Total energy + Delta-G solvation = -2976.645663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59417 -35.59796 -35.06682 -33.91985 -33.08378 -32.77814 -31.78318 -27.97822 -26.64785 -26.10424 -23.05749 -21.85411 -20.51293 -18.92745 -17.43222 -16.38508 -16.04928 -15.74973 -15.45671 -14.98832 -14.60169 -14.18256 -13.77922 -13.49957 -13.28296 -13.11891 -12.84112 -12.23811 -12.12342 -11.99743 -11.63439 -11.42496 -11.20291 -11.18218 -10.94091 -10.80466 -10.60047 -10.27043 -10.25660 -10.15982 -9.21563 -8.99381 -8.77714 -8.54737 -8.43025 -6.67695 -5.29378 1.35932 1.40670 2.38348 3.10199 3.14411 3.20342 3.76140 4.08480 4.64839 4.68016 4.82257 4.93966 5.01207 5.07989 5.26576 5.34902 5.42317 5.57660 5.68948 5.72869 5.74754 5.83524 5.92621 6.08933 6.12153 6.26861 6.36589 6.50584 6.51886 6.55555 6.73572 6.87032 7.04222 7.34591 7.92653 8.00509 8.91399 10.26517 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.005161 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.244822 B = 5423.605824 C = 5991.408399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.077 4.077 8 C -0.091 4.091 9 C 0.132 3.868 10 N -1.139 6.139 11 S 2.716 3.284 12 O -1.008 7.008 13 O -1.007 7.007 14 C -1.021 5.021 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.920 3.080 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 10.240 10.647 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.130 4.130 9 C 0.005 3.995 10 N -0.893 5.893 11 S 2.816 3.184 12 O -0.998 6.998 13 O -0.997 6.997 14 C -1.154 5.154 15 H 0.119 0.881 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.189 1.189 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.416 10.227 10.322 16.314 hybrid contribution 1.405 -0.360 -0.661 1.594 sum 8.821 9.867 9.661 16.386 Atomic orbital electron populations 1.20957 0.91069 1.03914 1.02330 1.19849 0.96244 0.92571 0.99063 1.21015 0.94244 0.97412 1.01256 1.21082 0.94321 0.97911 1.00880 1.21085 0.99662 0.92579 1.01211 1.21082 0.93583 0.98232 1.00042 1.19710 0.93640 0.94460 0.99996 1.20863 1.00298 0.93954 0.97835 1.21019 0.96655 0.86137 0.95705 1.55995 1.70759 1.29809 1.32766 1.00340 0.73724 0.72421 0.71928 1.93371 1.78269 1.43206 1.84957 1.93353 1.69699 1.54722 1.81942 1.30534 1.10452 1.61380 1.13075 0.88065 1.24742 0.95869 0.89251 0.98638 1.69892 1.14696 1.37666 1.25283 0.86212 0.80754 0.79605 0.79055 1.18888 1.20112 1.18878 0.91222 0.91429 0.90182 0.86241 0.86424 0.86336 0.85951 0.90500 0.90170 0.90578 0.92125 0.76800 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.22 36.00 0.33 -1.15 16 2 C -0.08 -0.97 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 4 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 5 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.11 -1.32 9.68 -39.58 -0.38 -1.71 16 7 C -0.08 -1.00 5.13 -104.63 -0.54 -1.54 16 8 C -0.09 -1.20 4.79 -27.88 -0.13 -1.33 16 9 C 0.13 2.25 6.01 -4.04 -0.02 2.23 16 10 N -1.14 -22.20 6.00 -10.62 -0.06 -22.26 16 11 S 2.72 71.88 5.02 -107.50 -0.54 71.34 16 12 O -1.01 -29.52 18.02 -57.17 -1.03 -30.55 16 13 O -1.01 -29.34 17.49 -57.17 -1.00 -30.34 16 14 C -1.02 -28.23 9.72 30.60 0.30 -27.93 16 15 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 16 C 0.13 3.74 5.46 -17.81 -0.10 3.64 16 17 N -0.85 -25.03 13.19 55.43 0.73 -24.30 16 18 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 24 H 0.08 1.07 5.43 -51.93 -0.28 0.79 16 25 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 30 H 0.08 0.99 6.99 -51.93 -0.36 0.63 16 31 H 0.08 1.39 6.52 -51.93 -0.34 1.05 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 6.64 8.65 -34.47 -0.30 6.34 16 34 H 0.29 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -35.11 304.63 -8.87 -43.98 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.20 Total: 6.44 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: -2.34 Total: -34.61 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.67 Total: -46.56 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -2.03 Total: -60.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 71.88 SS G_CDS: -0.54 Total: 71.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.11 -8.87 -43.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112799827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.737 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds