Wall clock time and date at job start Mon Mar 30 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 S 1.65595 * 120.00371 * 165.00045 * 10 9 8 12 12 O 1.42092 * 106.40125 * 178.54095 * 11 10 9 13 13 O 1.42101 * 106.39830 * 311.45771 * 11 10 9 14 14 C 1.76196 * 107.21794 * 64.99598 * 11 10 9 15 15 H 1.07999 * 120.00137 * 0.02562 * 14 11 10 16 16 C 1.37883 * 120.00088 * 180.02562 * 14 11 10 17 17 N 1.31521 * 119.99525 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00289 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47109 * 60.00109 * 18 16 14 20 20 H 1.48495 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46953 * 300.00321 * 18 16 14 22 22 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 23 23 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 24 24 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 25 25 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 29 29 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 30 30 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 31 31 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 32 32 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 33 33 H 0.97002 * 119.99329 * 345.00099 * 10 9 8 34 34 H 0.96999 * 119.99771 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 16 -0.4879 -4.6232 -2.7846 12 8 -1.0507 -5.8925 -2.4826 13 8 -1.2657 -3.5039 -3.1865 14 6 0.6927 -4.8939 -4.0641 15 1 1.7442 -4.7424 -3.8696 16 6 0.2742 -5.2993 -5.3138 17 7 -1.0063 -5.4834 -5.5508 18 14 1.5259 -5.5871 -6.6702 19 1 2.4772 -6.6468 -6.2492 20 1 0.8253 -6.0147 -7.9077 21 1 2.2703 -4.3291 -6.9317 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6582 2.1327 -0.0004 26 1 4.1203 2.1329 0.0001 27 1 5.3517 0.0002 0.0005 28 1 4.1207 -2.1321 0.0064 29 1 2.0693 -3.2822 0.4356 30 1 0.5336 -2.3956 0.5893 31 1 0.4571 -2.1013 -1.8716 32 1 1.9929 -2.9879 -2.0253 33 1 0.3560 -4.7139 -0.6470 34 1 -1.3008 -5.7682 -6.4300 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112799827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:59 Heat of formation + Delta-G solvation = -111.310273 kcal Electronic energy + Delta-G solvation = -18210.959455 eV Core-core repulsion = 15233.204203 eV Total energy + Delta-G solvation = -2977.755252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48334 -37.44753 -36.77736 -36.13668 -35.17506 -33.80162 -32.82649 -29.07901 -28.25482 -27.59120 -24.26331 -22.77894 -21.53021 -20.90250 -19.35563 -18.21221 -17.19119 -17.18569 -16.75042 -16.68759 -15.93998 -15.71552 -15.34261 -15.02287 -14.45803 -14.03739 -13.98100 -13.84548 -13.37421 -13.29228 -13.04121 -12.99750 -12.77887 -12.57270 -12.48299 -12.37973 -12.31845 -12.26668 -11.73069 -11.62143 -11.23324 -11.01320 -10.19518 -9.64399 -9.41380 -8.75140 -7.48130 0.31814 0.52412 0.55508 1.34160 1.36222 1.49173 2.21034 2.58351 2.87487 3.00831 3.70320 3.91912 3.95399 4.12472 4.14055 4.21406 4.31762 4.48376 4.53726 4.61441 4.67828 4.81790 4.85044 4.89196 5.01489 5.04195 5.18865 5.27384 5.32578 5.41782 5.65424 5.67769 5.82473 5.89507 6.19707 6.42169 6.78523 8.21221 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.005161 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.244822 B = 5423.605824 C = 5991.408399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.097 4.097 8 C -0.080 4.080 9 C 0.127 3.873 10 N -1.121 6.121 11 S 2.722 3.278 12 O -1.044 7.044 13 O -1.043 7.043 14 C -1.042 5.042 15 H 0.120 0.880 16 C 0.069 3.931 17 N -0.894 5.894 18 Si 0.989 3.011 19 H -0.250 1.250 20 H -0.263 1.263 21 H -0.251 1.251 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.417 0.583 34 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 11.067 10.851 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.139 4.139 7 C -0.098 4.098 8 C -0.118 4.118 9 C 0.000 4.000 10 N -0.881 5.881 11 S 2.822 3.178 12 O -1.035 7.035 13 O -1.033 7.033 14 C -1.176 5.176 15 H 0.138 0.862 16 C -0.144 4.144 17 N -0.525 5.525 18 Si 0.807 3.193 19 H -0.174 1.174 20 H -0.187 1.187 21 H -0.175 1.175 22 H 0.102 0.898 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.906 11.051 10.557 18.213 hybrid contribution 0.650 -0.532 -0.634 1.052 sum 10.555 10.519 9.923 17.904 Atomic orbital electron populations 1.20949 0.91103 1.03151 1.03033 1.20046 0.96536 0.93201 0.99675 1.21293 0.94941 0.97653 1.01003 1.21452 0.94206 0.99058 0.99568 1.21428 1.00989 0.92250 1.00380 1.21329 0.93290 0.99420 0.99862 1.19747 0.94277 0.94162 1.01647 1.20754 1.01088 0.95015 0.94977 1.21220 0.95870 0.84162 0.98705 1.55336 1.70293 1.30995 1.31430 0.99802 0.73910 0.71302 0.72759 1.93310 1.79554 1.44847 1.85746 1.93301 1.71272 1.55587 1.83158 1.30898 1.11517 1.61314 1.13832 0.86223 1.26020 0.98113 0.88503 1.01719 1.69987 1.17051 1.38906 1.26546 0.85174 0.78004 0.80367 0.75726 1.17375 1.18735 1.17461 0.89811 0.90731 0.92358 0.84581 0.83910 0.84014 0.84725 0.88595 0.89667 0.92314 0.91805 0.74880 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.22 71.23 0.66 -2.26 16 2 C -0.09 -2.28 5.88 -19.87 -0.12 -2.40 16 3 C -0.13 -2.72 9.70 22.27 0.22 -2.51 16 4 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 5 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.12 -2.63 9.68 22.27 0.22 -2.42 16 7 C -0.10 -2.40 5.13 -19.87 -0.10 -2.50 16 8 C -0.08 -2.01 4.79 29.85 0.14 -1.87 16 9 C 0.13 4.29 6.01 86.38 0.52 4.80 16 10 N -1.12 -43.67 6.00 -187.50 -1.12 -44.80 16 11 S 2.72 146.98 5.02 -56.49 -0.28 146.70 16 12 O -1.04 -62.72 18.02 -128.00 -2.31 -65.03 16 13 O -1.04 -62.76 17.49 -128.00 -2.24 -65.00 16 14 C -1.04 -57.67 9.72 67.74 0.66 -57.01 16 15 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16 16 C 0.07 3.88 5.46 84.66 0.46 4.35 16 17 N -0.89 -53.74 13.19 21.45 0.28 -53.45 16 18 Si 0.99 41.47 29.54 68.60 2.03 43.49 16 19 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 24 H 0.06 1.59 5.43 -2.39 -0.01 1.58 16 25 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 26 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 30 H 0.08 2.04 6.99 -2.39 -0.02 2.02 16 31 H 0.06 2.20 6.52 -2.39 -0.02 2.18 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.42 13.58 8.65 -96.74 -0.84 12.74 16 34 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -76.44 304.63 -0.27 -76.71 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.27 Total: 27.57 kcal Atomic # 6 Polarization: -69.29 SS G_CDS: 3.10 Total: -66.19 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -0.84 Total: -98.25 kcal Atomic # 8 Polarization: -125.48 SS G_CDS: -4.54 Total: -130.03 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 146.98 SS G_CDS: -0.28 Total: 146.70 kcal Total: -76.44 -0.27 -76.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112799827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.603 kcal (2) G-P(sol) polarization free energy of solvation -76.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds