Wall clock time and date at job start Mon Mar 30 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99632 * 2 1 4 4 H 1.48506 * 109.46663 * 239.99660 * 3 2 1 5 5 H 1.48495 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47261 * 119.99676 * 3 2 1 7 7 C 1.37877 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00142 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99904 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46915 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.47360 * 305.00643 * 15 14 13 17 17 O 1.42905 * 109.46812 * 65.00678 * 15 14 13 18 18 C 1.50699 * 109.47155 * 185.00324 * 15 14 13 19 19 C 1.38419 * 122.53913 * 100.00288 * 18 15 14 20 20 C 1.33394 * 114.92296 * 179.97438 * 19 18 15 21 21 S 1.75883 * 109.58995 * 359.97438 * 20 19 18 22 22 C 1.33388 * 122.53899 * 279.71210 * 18 15 14 23 23 H 0.97003 * 120.00658 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46814 * 60.00640 * 9 7 2 25 25 H 1.08998 * 109.47052 * 299.99993 * 9 7 2 26 26 H 1.09001 * 109.46455 * 60.00288 * 10 9 7 27 27 H 1.08998 * 109.47316 * 300.00726 * 10 9 7 28 28 H 0.96997 * 119.99985 * 0.02562 * 13 11 10 29 29 H 1.09000 * 109.46702 * 60.00787 * 14 13 11 30 30 H 1.08998 * 109.47819 * 300.00466 * 14 13 11 31 31 H 0.96691 * 114.00079 * 59.99598 * 17 15 14 32 32 H 1.08001 * 122.54328 * 359.95437 * 19 18 15 33 33 H 1.07992 * 125.20447 * 179.97438 * 20 19 18 34 34 H 1.08000 * 125.20731 * 0.02691 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4920 -4.9671 0.0020 12 8 0.2792 -4.9672 0.0020 13 7 2.1660 -6.1343 0.0024 14 6 1.4335 -7.4030 0.0035 15 6 2.4278 -8.5659 0.0031 16 1 3.1113 -8.4593 -0.8392 17 8 3.1710 -8.5575 1.2237 18 6 1.6784 -9.8676 -0.1197 19 6 1.5588 -10.5475 -1.3195 20 6 0.8638 -11.6842 -1.2545 21 16 0.3139 -11.9458 0.3956 22 6 1.0850 -10.4547 0.9207 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8920 26 1 2.8727 -3.6038 0.8910 27 1 2.8715 -3.6046 -0.8890 28 1 3.1359 -6.1342 0.0027 29 1 0.8066 -7.4613 -0.8863 30 1 0.8071 -7.4603 0.8937 31 1 2.6256 -8.6486 2.0169 32 1 1.9948 -10.1850 -2.2387 33 1 0.6686 -12.3431 -2.0876 34 1 1.0776 -10.0723 1.9306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292113937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:05 Heat of formation + Delta-G solvation = -94.119811 kcal Electronic energy + Delta-G solvation = -17385.308171 eV Core-core repulsion = 14408.298353 eV Total energy + Delta-G solvation = -2977.009818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89755 -39.86292 -37.24019 -35.60561 -35.27752 -33.03313 -31.19633 -29.55362 -27.64418 -25.56905 -23.57194 -22.83182 -21.28296 -19.87529 -19.03324 -18.82674 -17.87694 -17.42022 -16.95830 -16.59712 -16.34966 -15.83750 -15.57341 -14.77246 -14.53125 -14.33986 -14.18664 -13.86449 -13.78064 -13.38222 -13.22529 -13.13747 -12.75881 -12.50554 -12.44089 -11.89690 -11.78624 -11.63265 -11.32025 -11.30439 -10.71654 -10.55510 -10.10011 -9.76883 -9.36548 -8.17103 -6.31308 0.03780 0.71635 1.03242 1.42770 1.47416 1.55087 1.63053 1.71932 2.28145 2.46139 3.15690 3.41359 3.71143 3.88631 4.02165 4.10638 4.16310 4.44067 4.52695 4.56387 4.60954 4.69970 4.81205 5.07755 5.11045 5.37560 5.43865 5.46460 5.52117 5.64513 5.86427 6.18691 6.59246 6.66416 6.87176 7.35084 7.39154 8.95402 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.053448 B = 0.002825 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.750289 B = 9908.792282 C =10100.752790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.713 5.713 14 C 0.095 3.905 15 C 0.175 3.825 16 H 0.127 0.873 17 O -0.557 6.557 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.215 4.215 21 S 0.106 5.894 22 C -0.211 4.211 23 H 0.263 0.737 24 H -0.018 1.018 25 H -0.018 1.018 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.418 0.582 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.387 0.613 32 H 0.157 0.843 33 H 0.186 0.814 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -25.924 -0.235 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.367 5.367 14 C -0.029 4.029 15 C 0.113 3.887 16 H 0.145 0.855 17 O -0.364 6.364 18 C -0.157 4.157 19 C -0.170 4.170 20 C -0.350 4.350 21 S 0.370 5.630 22 C -0.347 4.347 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.174 0.826 33 H 0.203 0.797 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.846 -26.934 0.084 27.562 hybrid contribution 0.359 1.891 -0.343 1.955 sum 6.205 -25.043 -0.259 25.801 Atomic orbital electron populations 1.70170 1.08327 1.27879 1.51456 1.26149 0.95729 1.03977 0.94631 0.85369 0.78047 0.77302 0.79495 1.18664 1.21351 1.18679 1.21705 0.94028 0.91646 1.50852 0.90570 1.18688 0.93723 0.92493 0.94664 1.21635 0.99305 0.90077 1.04907 1.21339 0.87766 0.86806 0.74167 1.90657 1.16740 1.88435 1.51289 1.45792 1.11071 1.04327 1.75480 1.22035 0.95237 0.83273 1.02393 1.20557 0.91585 0.87412 0.89147 0.85546 1.86601 1.37982 1.95964 1.15897 1.19513 1.03001 0.99254 0.93958 1.20275 1.02035 0.95510 0.99163 1.25946 1.05511 1.02781 1.00744 1.84324 1.53552 1.22139 1.02980 1.25679 1.04790 1.00291 1.03951 0.92851 0.99966 0.99990 0.87765 0.87685 0.74470 0.91766 0.92117 0.76322 0.82586 0.79705 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.29 21.45 0.28 -59.72 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 11 C 0.51 19.77 7.83 87.65 0.69 20.46 16 12 O -0.59 -29.24 15.98 -3.03 -0.05 -29.28 16 13 N -0.71 -18.87 5.50 -463.06 -2.55 -21.42 16 14 C 0.10 2.19 5.29 86.38 0.46 2.65 16 15 C 0.18 2.86 3.33 29.85 0.10 2.96 16 16 H 0.13 1.80 8.09 -2.39 -0.02 1.78 16 17 O -0.56 -9.12 13.15 -148.98 -1.96 -11.08 16 18 C -0.14 -2.32 4.88 -20.92 -0.10 -2.42 16 19 C -0.14 -2.09 9.95 21.22 0.21 -1.88 16 20 C -0.21 -2.90 11.23 66.72 0.75 -2.15 16 21 S 0.11 1.49 23.34 -56.49 -1.32 0.17 16 22 C -0.21 -3.17 10.45 66.72 0.70 -2.47 16 23 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 24 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 25 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 26 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 27 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 28 H 0.42 8.46 8.47 -92.71 -0.79 7.67 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.39 4.39 7.88 -74.06 -0.58 3.80 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.18 1.97 7.28 -2.91 -0.02 1.95 16 Total: -1.00 -78.64 312.20 -0.02 -78.66 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.25 Total: 12.15 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.79 Total: -15.98 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.26 Total: -81.15 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -2.01 Total: -40.36 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.32 Total: 0.17 kcal Total: -78.64 -0.02 -78.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292113937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.461 kcal (2) G-P(sol) polarization free energy of solvation -78.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds