Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 S 1.81393 * 109.46996 * 270.21769 * 9 8 2 11 11 O 1.42105 * 110.54761 * 291.62065 * 10 9 8 12 12 O 1.42102 * 110.54511 * 68.37933 * 10 9 8 13 13 N 1.65603 * 104.44720 * 180.02562 * 10 9 8 14 14 C 1.36932 * 120.00410 * 65.00208 * 13 10 9 15 15 H 1.08008 * 119.99783 * 359.97438 * 14 13 10 16 16 C 1.38810 * 120.00319 * 180.02562 * 14 13 10 17 17 N 1.31619 * 120.00246 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99935 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47180 * 90.00176 * 18 16 14 20 20 H 1.48499 * 109.47309 * 209.99859 * 18 16 14 21 21 H 1.48502 * 109.47333 * 329.99780 * 18 16 14 22 22 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 23 23 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 24 24 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 25 25 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 29 29 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 30 30 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 31 31 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 32 32 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 33 33 H 0.97004 * 119.99548 * 244.99728 * 13 10 9 34 34 H 0.96999 * 119.99861 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 16 1.1362 -3.0290 1.6987 11 8 2.3532 -3.3923 2.3361 12 8 0.2105 -2.1554 2.3305 13 7 0.3126 -4.4578 1.5480 14 6 0.9268 -5.5466 0.9892 15 1 1.9484 -5.4734 0.6464 16 6 0.2363 -6.7441 0.8625 17 7 -1.0088 -6.8332 1.2798 18 14 1.0741 -8.2291 0.0995 19 1 1.7483 -9.0174 1.1623 20 1 0.0596 -9.0766 -0.5770 21 1 2.0805 -7.7741 -0.8931 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5139 25 1 1.6581 2.1326 0.0004 26 1 4.1204 2.1326 0.0100 27 1 5.3516 0.0002 0.0096 28 1 4.5118 -2.8187 1.0287 29 1 3.7470 -3.2607 -0.5166 30 1 5.2885 -2.3708 -0.5089 31 1 0.4942 -2.3709 -0.5265 32 1 2.0358 -3.2608 -0.5225 33 1 -0.6050 -4.5234 1.8556 34 1 -1.4914 -7.6699 1.1908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294919116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -81.742735 kcal Electronic energy + Delta-G solvation = -18914.125043 eV Core-core repulsion = 15937.651936 eV Total energy + Delta-G solvation = -2976.473107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71134 -37.91479 -36.75334 -36.44459 -34.50590 -34.41102 -32.83706 -29.63505 -27.54814 -27.36453 -26.42610 -22.07963 -21.65960 -20.15008 -19.89774 -18.51123 -17.55624 -17.18629 -16.74368 -16.45840 -16.11422 -15.49764 -15.33735 -14.81647 -14.13465 -14.02710 -13.86513 -13.79902 -13.72722 -13.59670 -13.08231 -12.96443 -12.89150 -12.80778 -12.64753 -12.50943 -12.32688 -12.07994 -11.92742 -11.86378 -11.81626 -11.66244 -10.20284 -9.49431 -9.48196 -8.32168 -5.87955 -0.53008 0.41035 0.45991 1.48391 1.51781 1.59828 2.17519 2.53554 2.74328 2.97943 3.21630 3.43660 3.58720 3.87207 3.94923 4.11104 4.14099 4.41099 4.48254 4.59256 4.66682 4.76990 4.78264 4.87325 4.97177 4.98570 5.07137 5.28666 5.35900 5.53004 5.58767 5.60796 5.67304 6.09004 6.73626 6.96857 7.32471 8.86343 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.006344 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.746636 B = 4412.282565 C = 4890.670449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.107 4.107 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.134 4.134 8 C -0.112 4.112 9 C -0.582 4.582 10 S 2.583 3.417 11 O -0.991 6.991 12 O -1.009 7.009 13 N -0.982 5.982 14 C -0.314 4.314 15 H 0.111 0.889 16 C -0.020 4.020 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.252 1.252 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.158 0.842 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.403 0.597 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 12.429 -6.986 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.126 4.126 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.190 4.190 8 C -0.114 4.114 9 C -0.709 4.709 10 S 2.679 3.321 11 O -0.981 6.981 12 O -0.999 6.999 13 N -0.733 5.733 14 C -0.448 4.448 15 H 0.128 0.872 16 C -0.222 4.222 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.175 1.175 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.168 0.832 26 H 0.176 0.824 27 H 0.168 0.832 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.237 0.763 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.898 12.764 -6.209 16.243 hybrid contribution -0.617 -1.203 -0.643 1.498 sum 7.280 11.561 -6.852 15.284 Atomic orbital electron populations 1.21072 0.90596 1.03979 1.03376 1.20125 0.97028 0.92908 0.98776 1.21360 0.95019 0.97466 1.01314 1.21578 0.94138 0.99032 0.97804 1.21356 1.01218 0.91265 1.01295 1.20128 0.92664 0.97310 0.98675 1.21084 1.00907 0.93718 1.03309 1.19019 0.93648 0.92338 1.06390 1.29686 1.09980 1.04255 1.27026 1.06350 0.73576 0.72560 0.79627 1.93450 1.48111 1.82567 1.74021 1.93414 1.63350 1.67075 1.76011 1.51449 1.26318 1.22144 1.73382 1.19557 0.97776 0.89600 1.37867 0.87166 1.26045 0.96168 1.01759 0.98201 1.69806 1.11175 1.28202 1.47929 0.85082 0.78057 0.77697 0.78577 1.20387 1.20613 1.17535 0.89167 0.92401 0.89561 0.83168 0.82391 0.83197 0.90925 0.91562 0.88593 0.83799 0.83582 0.76349 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.19 71.24 0.65 -3.06 16 2 C -0.09 -2.61 5.88 -19.87 -0.12 -2.73 16 3 C -0.13 -3.20 9.70 22.27 0.22 -2.99 16 4 C -0.11 -2.29 10.05 22.27 0.22 -2.07 16 5 C -0.13 -3.23 9.70 22.27 0.22 -3.01 16 6 C -0.09 -2.62 5.88 -19.86 -0.12 -2.74 16 7 C -0.13 -3.84 9.48 71.24 0.68 -3.16 16 8 C -0.11 -3.72 5.14 -19.87 -0.10 -3.82 16 9 C -0.58 -20.65 4.99 71.24 0.36 -20.30 16 10 S 2.58 114.86 5.39 -56.49 -0.30 114.56 16 11 O -0.99 -48.71 17.09 -127.65 -2.18 -50.90 16 12 O -1.01 -47.92 16.39 -127.65 -2.09 -50.01 16 13 N -0.98 -48.94 5.65 -54.26 -0.31 -49.25 16 14 C -0.31 -16.08 9.49 84.03 0.80 -15.29 16 15 H 0.11 5.23 7.82 -2.91 -0.02 5.21 16 16 C -0.02 -1.05 5.50 84.86 0.47 -0.59 16 17 N -0.93 -51.29 13.06 21.65 0.28 -51.00 16 18 Si 0.98 40.42 29.55 68.60 2.03 42.45 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.06 1.89 4.92 -2.39 -0.01 1.88 16 24 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 25 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 26 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.07 2.34 7.59 -2.39 -0.02 2.32 16 29 H 0.07 1.92 5.95 -2.39 -0.01 1.91 16 30 H 0.10 2.07 8.08 -2.39 -0.02 2.05 16 31 H 0.14 4.66 6.72 -2.39 -0.02 4.64 16 32 H 0.15 4.88 5.95 -2.39 -0.01 4.86 16 33 H 0.40 21.01 7.99 -96.74 -0.77 20.24 16 34 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -67.07 297.18 1.05 -66.02 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.35 Total: 37.87 kcal Atomic # 6 Polarization: -63.01 SS G_CDS: 3.27 Total: -59.74 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -0.02 Total: -100.25 kcal Atomic # 8 Polarization: -96.63 SS G_CDS: -4.27 Total: -100.91 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 114.86 SS G_CDS: -0.30 Total: 114.56 kcal Total: -67.07 1.05 -66.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294919116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.721 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds