Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 H 1.09000 * 109.46771 * 304.99491 * 3 2 1 5 5 C 1.50702 * 109.46783 * 184.99906 * 3 2 1 6 6 H 1.07997 * 119.99812 * 239.99170 * 5 3 2 7 7 C 1.37879 * 120.00011 * 59.99734 * 5 3 2 8 8 N 1.31513 * 119.99980 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99596 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47288 * 90.00263 * 9 7 5 11 11 H 1.48510 * 109.47019 * 209.99965 * 9 7 5 12 12 H 1.48500 * 109.47234 * 329.99536 * 9 7 5 13 13 N 1.46489 * 109.47408 * 64.99696 * 3 2 1 14 14 C 1.34782 * 120.00198 * 275.00102 * 13 3 2 15 15 O 1.21560 * 119.99747 * 359.97438 * 14 13 3 16 16 C 1.47774 * 120.00167 * 180.02562 * 14 13 3 17 17 C 1.39974 * 120.92472 * 179.97438 * 16 14 13 18 18 N 1.32115 * 118.93662 * 179.72529 * 17 16 14 19 19 C 1.32014 * 120.95806 * 0.27969 * 18 17 16 20 20 Cl 1.73598 * 118.97008 * 180.02562 * 19 18 17 21 21 N 1.32011 * 122.06107 * 0.02562 * 19 18 17 22 22 C 1.32117 * 120.95655 * 359.97438 * 21 19 18 23 23 H 1.09006 * 109.47455 * 300.01048 * 1 2 3 24 24 H 1.09005 * 109.46922 * 60.00392 * 1 2 3 25 25 H 1.08997 * 109.47541 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47253 * 239.99043 * 2 1 3 27 27 H 1.09005 * 109.46922 * 119.99608 * 2 1 3 28 28 H 0.97001 * 119.99842 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00111 * 94.99895 * 13 3 2 30 30 H 1.08002 * 120.53307 * 0.02562 * 17 16 14 31 31 H 1.07999 * 120.53168 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3364 -2.1728 9 14 6.0049 0.8810 -1.3816 10 1 6.5548 -0.3504 -0.7600 11 1 6.3831 0.9220 -2.8172 12 1 6.5569 2.0736 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3410 2.6327 0.4318 16 6 0.0444 3.3257 2.6292 17 6 -1.2146 3.9211 2.7697 18 7 -1.5250 4.4967 3.9177 19 6 -0.6661 4.5198 4.9199 20 17 -1.1281 5.2896 6.4057 21 7 0.5332 3.9759 4.8276 22 6 0.9253 3.3796 3.7157 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8293 -0.0615 -2.9497 29 1 2.2719 2.1232 1.9977 30 1 -1.9228 3.9059 1.9545 31 1 1.9079 2.9365 3.6479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309445904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -16.447430 kcal Electronic energy + Delta-G solvation = -17909.212877 eV Core-core repulsion = 14829.987137 eV Total energy + Delta-G solvation = -3079.225740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.43842 -40.49820 -38.10212 -37.01092 -35.33238 -34.40497 -33.57294 -32.28113 -29.01150 -26.41937 -25.95180 -24.82946 -22.46747 -21.34560 -19.66710 -19.08818 -18.97532 -17.65393 -17.11282 -16.76316 -16.23128 -16.02946 -15.52586 -15.23766 -14.77824 -14.54461 -13.96106 -13.51460 -13.19724 -13.04063 -13.00443 -12.89731 -12.65951 -12.64496 -12.28592 -12.15293 -12.05611 -11.57179 -11.04467 -10.92308 -10.72824 -10.66864 -10.51211 -9.71195 -8.14185 -6.30907 -0.93300 -0.29876 0.14577 1.47902 1.49417 1.58461 1.71863 2.22315 2.48559 2.52354 2.74235 3.16233 3.16957 3.34871 3.54082 3.85520 4.50573 4.53348 4.60154 4.77720 4.80927 5.09203 5.29224 5.41341 5.44568 5.51561 5.61678 5.80291 5.89895 6.18340 6.44270 6.75306 6.83740 7.29638 7.45385 8.90917 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.031327 B = 0.004302 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.594948 B = 6506.947633 C = 7137.071306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.691 5.691 14 C 0.557 3.443 15 O -0.567 6.567 16 C -0.232 4.232 17 C 0.223 3.777 18 N -0.517 5.517 19 C 0.364 3.636 20 Cl 0.044 6.956 21 N -0.514 5.514 22 C 0.210 3.790 23 H 0.044 0.956 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.201 0.799 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 5.637 13.823 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.340 5.340 14 C 0.342 3.658 15 O -0.448 6.448 16 C -0.240 4.240 17 C 0.057 3.943 18 N -0.234 5.234 19 C 0.072 3.928 20 Cl 0.072 6.928 21 N -0.231 5.231 22 C 0.043 3.957 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.218 0.782 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.680 6.031 13.978 16.249 hybrid contribution 1.244 -0.421 -0.823 1.550 sum -4.436 5.610 13.155 14.974 Atomic orbital electron populations 1.21704 0.96932 0.99279 1.00404 1.21812 0.93786 0.99017 1.01582 1.18465 0.93793 0.89262 0.80904 0.97485 1.21573 0.91313 1.38975 1.06772 0.90654 1.25689 1.02897 0.94443 0.95114 1.70032 1.36948 1.38271 1.09871 0.85434 0.79590 0.78836 0.77007 1.19853 1.21620 1.18870 1.46178 1.14731 1.55049 1.18067 1.17902 0.82609 0.78830 0.86445 1.90780 1.52214 1.60957 1.40822 1.21886 0.99054 1.05670 0.97374 1.23695 0.93400 0.84096 0.93071 1.68098 1.35077 1.19681 1.00502 1.23550 0.87044 0.91841 0.90377 1.98447 1.91067 1.77041 1.26239 1.68032 1.16241 1.11569 1.27217 1.23956 0.99591 0.87575 0.84552 0.93704 0.95161 0.93717 0.90890 0.93810 0.92637 0.75921 0.78215 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.51 71.98 0.61 -4.60 16 2 C -0.12 -5.59 5.45 30.59 0.17 -5.42 16 3 C 0.28 13.01 2.24 44.25 0.10 13.11 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.39 16 5 C -0.55 -26.75 8.73 25.60 0.22 -26.53 16 6 H 0.08 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.91 -49.66 11.29 21.45 0.24 -49.42 16 9 Si 0.97 39.96 29.54 68.60 2.03 41.99 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 N -0.69 -24.80 4.98 -449.06 -2.24 -27.04 16 14 C 0.56 19.23 6.35 86.76 0.55 19.78 16 15 O -0.57 -23.64 13.58 -3.91 -0.05 -23.69 16 16 C -0.23 -6.15 5.91 -19.91 -0.12 -6.27 16 17 C 0.22 5.64 10.88 85.07 0.93 6.56 16 18 N -0.52 -13.11 10.39 -189.64 -1.97 -15.08 16 19 C 0.36 8.90 8.17 180.75 1.48 10.38 16 20 Cl 0.04 0.89 29.26 -2.72 -0.08 0.81 16 21 N -0.51 -12.32 10.39 -189.64 -1.97 -14.29 16 22 C 0.21 4.68 10.81 85.07 0.92 5.60 16 23 H 0.04 1.76 5.65 -2.38 -0.01 1.74 16 24 H 0.03 1.35 7.84 -2.38 -0.02 1.33 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 27 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.40 11.61 6.67 -92.71 -0.62 10.99 16 30 H 0.20 4.60 7.74 -2.91 -0.02 4.58 16 31 H 0.21 3.40 6.53 -2.91 -0.02 3.38 16 Total: -1.00 -60.04 283.38 1.83 -58.21 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.56 Total: 14.49 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.31 Total: 14.02 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -5.93 Total: -105.82 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -60.04 1.83 -58.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309445904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -60.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds