Wall clock time and date at job start Mon Mar 30 2020 00:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47358 * 2 1 4 4 C 1.33334 * 122.71028 * 124.99728 * 3 2 1 5 5 S 1.76170 * 108.10638 * 180.02562 * 4 3 2 6 6 C 1.70973 * 90.35756 * 0.02562 * 5 4 3 7 7 S 1.76199 * 124.95158 * 179.97438 * 6 5 4 8 8 C 1.80992 * 100.00115 * 0.02562 * 7 6 5 9 9 C 1.52997 * 109.47229 * 183.89131 * 8 7 6 10 10 C 1.50698 * 115.56097 * 40.05071 * 9 8 7 11 11 H 1.07997 * 120.00237 * 270.76602 * 10 9 8 12 12 C 1.37880 * 119.99917 * 90.76277 * 10 9 8 13 13 N 1.31513 * 120.00073 * 174.05771 * 12 10 9 14 14 Si 1.86804 * 120.00143 * 354.06244 * 12 10 9 15 15 H 1.48501 * 109.47265 * 92.57691 * 14 12 10 16 16 H 1.48493 * 109.47283 * 212.58186 * 14 12 10 17 17 H 1.48503 * 109.46968 * 332.58215 * 14 12 10 18 18 C 1.53003 * 117.49938 * 185.74288 * 9 8 7 19 19 C 1.53001 * 60.03182 * 107.48064 * 18 9 8 20 20 N 1.29764 * 110.09243 * 0.22475 * 6 5 4 21 21 H 1.09009 * 109.47109 * 300.00782 * 1 2 3 22 22 H 1.09004 * 109.47121 * 59.99986 * 1 2 3 23 23 H 1.08997 * 109.47605 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46940 * 239.99243 * 2 1 3 25 25 H 1.09001 * 109.46466 * 119.99679 * 2 1 3 26 26 H 1.07992 * 125.94885 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.47488 * 63.89139 * 8 7 6 28 28 H 1.09005 * 109.47400 * 303.89204 * 8 7 6 29 29 H 0.97006 * 120.00026 * 180.02562 * 13 12 10 30 30 H 1.09005 * 117.49598 * 214.97797 * 18 9 8 31 31 H 1.08997 * 117.50295 * 359.97271 * 18 9 8 32 32 H 1.08994 * 117.49979 * 107.50316 * 19 18 9 33 33 H 1.09003 * 117.49087 * 252.52092 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8792 1.8855 0.9190 5 16 3.2068 3.5779 0.5556 6 6 2.1697 3.4984 -0.8013 7 16 1.8309 4.8394 -1.8929 8 6 2.8506 6.1278 -1.1339 9 6 2.6384 7.4491 -1.8755 10 6 1.2192 7.7421 -2.2889 11 1 0.8547 7.4025 -3.2471 12 6 0.3859 8.4437 -1.4436 13 7 -0.8130 8.8010 -1.8494 14 14 0.9598 8.8869 0.2780 15 1 1.5793 10.2364 0.2612 16 1 -0.2023 8.8871 1.2024 17 1 1.9588 7.8895 0.7388 18 6 3.5155 8.6354 -1.4703 19 6 3.7580 7.9261 -2.8040 20 7 1.6643 2.3078 -0.9070 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.2924 1.3226 1.7428 27 1 3.9009 5.8422 -1.1937 28 1 2.5657 6.2480 -0.0886 29 1 -1.3991 9.2950 -1.2549 30 1 3.0659 9.6279 -1.5026 31 1 4.2434 8.4748 -0.6750 32 1 3.4681 8.4518 -3.7137 33 1 4.6454 7.2984 -2.8860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383065700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:58 Heat of formation + Delta-G solvation = 58.957158 kcal Electronic energy + Delta-G solvation = -15765.099317 eV Core-core repulsion = 13237.480286 eV Total energy + Delta-G solvation = -2527.619031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 269.060 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48799 -37.14021 -33.41785 -32.20604 -29.53618 -28.40790 -25.75798 -25.04560 -23.37858 -21.76573 -19.84162 -18.93697 -18.05743 -16.65197 -16.06540 -15.09014 -14.98301 -14.54718 -14.04666 -13.94191 -13.60768 -13.36180 -13.24707 -12.73572 -12.48900 -12.24324 -11.79176 -11.25510 -11.18984 -10.92153 -10.79945 -10.57690 -10.33026 -10.21653 -9.79486 -9.56419 -9.24773 -9.16095 -8.88477 -8.70196 -8.52955 -6.97259 -6.21661 -4.25255 0.86583 1.42062 1.65270 1.98683 2.95141 3.05344 3.21153 3.31883 3.32391 4.32090 4.57836 4.73509 5.00478 5.04403 5.24420 5.29880 5.44393 5.48668 5.66060 5.69616 5.83613 5.91247 5.97962 6.07195 6.15968 6.21964 6.35710 6.36156 6.56580 6.81396 6.99828 7.57213 7.89404 8.35046 8.82288 9.40436 10.89363 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.005838 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.451345 B = 4795.394605 C = 5051.888930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.087 3.913 4 C -0.285 4.285 5 S 0.095 5.905 6 C 0.025 3.975 7 S 0.088 5.912 8 C -0.101 4.101 9 C 0.010 3.990 10 C -0.490 4.490 11 H 0.086 0.914 12 C 0.088 3.912 13 N -0.884 5.884 14 Si 0.874 3.126 15 H -0.276 1.276 16 H -0.291 1.291 17 H -0.260 1.260 18 C -0.190 4.190 19 C -0.174 4.174 20 N -0.469 5.469 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.170 0.830 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.267 0.733 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -11.786 5.673 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.428 4.428 5 S 0.346 5.654 6 C -0.360 4.360 7 S 0.325 5.675 8 C -0.251 4.251 9 C 0.007 3.993 10 C -0.529 4.529 11 H 0.104 0.896 12 C -0.117 4.117 13 N -0.520 5.520 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.184 1.184 18 C -0.229 4.229 19 C -0.211 4.211 20 N -0.189 5.189 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.188 0.812 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.456 -10.901 4.710 14.022 hybrid contribution 0.788 -0.570 2.317 2.513 sum 8.244 -11.471 7.027 15.778 Atomic orbital electron populations 1.21677 0.94257 1.01354 1.02974 1.20102 0.96749 0.89073 1.02588 1.20349 0.96054 0.97203 0.91144 1.26472 1.10402 0.97813 1.08144 1.84054 1.46109 1.09993 1.25294 1.29694 1.00661 1.02320 1.03347 1.86601 1.56714 0.94021 1.30126 1.23864 0.99599 0.98401 1.03272 1.18986 0.93998 0.87973 0.98314 1.20168 0.91475 1.36028 1.05223 0.89640 1.24935 0.94505 0.94323 0.97906 1.69882 1.08306 1.37331 1.36437 0.86944 0.78416 0.79521 0.84947 1.20209 1.21748 1.18431 1.23013 1.03520 0.98378 0.98027 1.22948 0.99656 1.04186 0.94325 1.66477 1.25946 0.99411 1.27046 0.92894 0.91453 0.92512 0.90336 0.90635 0.81220 0.90911 0.89499 0.92288 0.88878 0.90731 0.88971 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.81 37.16 0.36 -1.29 16 2 C -0.05 -0.52 6.43 -27.89 -0.18 -0.69 16 3 C 0.09 1.32 6.08 -84.19 -0.51 0.81 16 4 C -0.28 -3.95 11.04 29.02 0.32 -3.63 16 5 S 0.09 1.49 21.52 -107.50 -2.31 -0.83 16 6 C 0.02 0.46 7.59 51.89 0.39 0.85 16 7 S 0.09 1.79 21.16 -107.50 -2.27 -0.48 16 8 C -0.10 -1.99 4.61 37.16 0.17 -1.82 16 9 C 0.01 0.21 1.11 -155.62 -0.17 0.04 16 10 C -0.49 -12.78 8.14 -34.44 -0.28 -13.06 16 11 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 12 C 0.09 2.39 5.46 -17.82 -0.10 2.30 16 13 N -0.88 -25.79 13.96 55.43 0.77 -25.02 16 14 Si 0.87 20.68 25.06 -169.99 -4.26 16.42 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.26 -5.76 5.40 56.52 0.31 -5.45 16 18 C -0.19 -3.75 7.63 -26.73 -0.20 -3.95 16 19 C -0.17 -3.28 9.89 -26.69 -0.26 -3.55 16 20 N -0.47 -8.60 10.40 -10.94 -0.11 -8.72 16 21 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 26 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.07 1.24 7.92 -51.91 -0.41 0.83 16 28 H 0.09 1.75 6.04 -51.91 -0.31 1.44 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.94 7.15 -51.93 -0.37 1.57 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 33 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -28.73 299.92 -8.67 -37.40 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.54 Total: 0.70 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -0.46 Total: -23.99 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.66 Total: -33.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.26 Total: 16.42 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -4.59 Total: -1.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.73 -8.67 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383065700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.358 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds