Wall clock time and date at job start Mon Mar 30 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00309 * 2 1 4 4 H 1.48498 * 109.46926 * 270.00220 * 3 2 1 5 5 H 1.48496 * 109.46596 * 30.00399 * 3 2 1 6 6 H 1.48496 * 109.47019 * 150.00125 * 3 2 1 7 7 C 1.37881 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99960 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53040 * 109.46041 * 179.97438 * 9 7 2 11 11 C 1.53185 * 109.31153 * 181.37102 * 10 9 7 12 12 N 1.46930 * 108.77979 * 305.36800 * 11 10 9 13 13 S 1.65599 * 120.63273 * 233.58448 * 12 11 10 14 14 O 1.42106 * 104.27740 * 333.93022 * 13 12 11 15 15 O 1.42092 * 104.27889 * 206.07059 * 13 12 11 16 16 C 1.81399 * 104.44705 * 90.00005 * 13 12 11 17 17 F 1.39905 * 109.47243 * 185.00258 * 16 13 12 18 18 F 1.39898 * 109.47339 * 305.00059 * 16 13 12 19 19 C 1.46930 * 118.73545 * 53.86271 * 12 11 10 20 20 C 1.53042 * 109.45026 * 300.06134 * 9 7 2 21 21 H 0.97004 * 119.99129 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.45918 * 60.02700 * 9 7 2 23 23 H 1.08999 * 109.49082 * 61.42408 * 10 9 7 24 24 H 1.08997 * 109.50059 * 301.32726 * 10 9 7 25 25 H 1.09004 * 109.58698 * 185.57853 * 11 10 9 26 26 H 1.09001 * 109.70613 * 65.22616 * 11 10 9 27 27 H 1.09001 * 109.47190 * 64.99852 * 16 13 12 28 28 H 1.08991 * 109.58955 * 65.92782 * 19 12 11 29 29 H 1.08998 * 109.58430 * 186.35399 * 19 12 11 30 30 H 1.08993 * 109.49626 * 298.57296 * 20 9 7 31 31 H 1.08999 * 109.49538 * 58.66996 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6372 -0.0010 11 6 5.5528 -2.6334 0.0330 12 7 6.0487 -1.8183 -1.0843 13 16 7.1468 -2.4374 -2.1582 14 8 7.8328 -3.4392 -1.4196 15 8 7.8317 -1.2964 -2.6562 16 6 6.1321 -3.1893 -3.4603 17 9 6.9604 -3.8492 -4.3745 18 9 5.2445 -4.1071 -2.8884 19 6 5.5564 -0.4413 -1.2272 20 6 4.0207 -0.4711 -1.2501 21 1 -0.4849 0.8402 0.0004 22 1 3.8750 -0.6810 0.8892 23 1 3.6787 -3.1440 -0.9031 24 1 3.6392 -3.1580 0.8769 25 1 5.9230 -3.6538 -0.0666 26 1 5.8985 -2.2097 0.9759 27 1 5.5684 -2.4119 -3.9761 28 1 5.9002 0.1589 -0.3849 29 1 5.9290 -0.0149 -2.1586 30 1 3.6781 -0.9980 -2.1406 31 1 3.6381 0.5495 -1.2609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397171890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:37 Heat of formation + Delta-G solvation = -154.858974 kcal Electronic energy + Delta-G solvation = -19979.655430 eV Core-core repulsion = 16445.782235 eV Total energy + Delta-G solvation = -3533.873195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.34684 -47.50393 -38.28891 -37.62454 -36.40691 -33.61975 -31.40448 -30.76564 -27.65481 -26.12649 -23.10801 -22.38654 -20.15179 -19.24733 -18.47177 -18.07146 -17.95682 -17.19918 -16.78308 -15.98767 -14.92476 -14.73262 -14.50169 -14.35207 -13.92826 -13.78278 -13.36684 -13.31702 -13.12686 -12.92932 -12.73277 -12.54568 -12.43832 -11.92478 -11.60056 -11.16086 -10.87457 -10.82005 -10.30800 -10.15306 -9.86820 -9.57234 -9.21500 -8.73252 -8.63711 -6.16228 -4.16209 -0.54304 2.12964 3.07339 3.15809 3.27227 3.31397 3.47729 3.72664 3.99963 4.25443 4.30600 4.66439 5.10970 5.34476 5.51989 5.58481 5.73985 5.79899 5.86584 5.97098 6.19433 6.45788 6.53112 6.67799 6.77417 7.08435 7.38013 7.65387 8.42570 8.88385 9.45382 10.96995 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.006759 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.891598 B = 4141.662009 C = 4341.426949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.118 4.118 11 C 0.115 3.885 12 N -0.968 5.968 13 S 2.591 3.409 14 O -0.913 6.913 15 O -0.915 6.915 16 C -0.243 4.243 17 F -0.177 7.177 18 F -0.163 7.163 19 C 0.110 3.890 20 C -0.141 4.141 21 H 0.264 0.736 22 H 0.031 0.969 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -3.150 -4.583 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.003 4.003 10 C -0.156 4.156 11 C -0.009 4.009 12 N -0.810 5.810 13 S 2.670 3.330 14 O -0.903 6.903 15 O -0.905 6.905 16 C -0.376 4.376 17 F -0.159 7.159 18 F -0.144 7.144 19 C -0.015 4.015 20 C -0.179 4.179 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.547 -3.095 -4.605 14.639 hybrid contribution -0.565 0.697 -0.673 1.122 sum 12.982 -2.398 -5.278 14.217 Atomic orbital electron populations 1.69902 1.06333 1.26994 1.50507 1.25062 0.94704 0.99085 0.94510 0.86900 0.80110 0.83690 0.77884 1.20515 1.22418 1.18809 1.21049 0.88711 0.94516 1.51036 0.90763 1.19103 0.96757 0.91612 0.92841 1.21882 0.91502 0.99798 1.02459 1.21796 0.96912 0.94118 0.88085 1.57659 1.63267 1.21865 1.38181 1.06657 0.75668 0.75248 0.75456 1.93635 1.68972 1.61314 1.66368 1.93661 1.68794 1.46926 1.81142 1.33898 0.99898 0.96018 1.07806 1.93024 1.71350 1.82921 1.68599 1.93079 1.68999 1.68046 1.84277 1.21908 0.96975 0.79875 1.02716 1.22541 0.91449 1.01496 1.02457 0.92608 0.95051 0.91878 0.90889 0.89616 0.90275 0.83499 0.90111 0.89855 0.91662 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.88 20.26 24.38 -169.99 -4.14 16.12 16 4 H -0.28 -6.13 6.85 56.52 0.39 -5.74 16 5 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 7 C -0.52 -13.35 9.14 -34.44 -0.31 -13.66 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.02 0.33 1.65 -91.73 -0.15 0.17 16 10 C -0.12 -2.00 5.30 -26.61 -0.14 -2.14 16 11 C 0.11 1.62 6.31 -3.71 -0.02 1.59 16 12 N -0.97 -13.46 3.22 -113.27 -0.36 -13.82 16 13 S 2.59 33.95 5.65 -107.50 -0.61 33.34 16 14 O -0.91 -13.83 16.73 -57.54 -0.96 -14.80 16 15 O -0.92 -13.13 16.71 -57.54 -0.96 -14.10 16 16 C -0.24 -2.96 6.13 101.05 0.62 -2.34 16 17 F -0.18 -2.30 17.38 2.25 0.04 -2.27 16 18 F -0.16 -2.28 17.38 2.25 0.04 -2.24 16 19 C 0.11 1.59 6.34 -3.48 -0.02 1.57 16 20 C -0.14 -2.57 4.86 -26.39 -0.13 -2.70 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.08 7.10 -51.93 -0.37 0.71 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.15 1.34 8.14 -51.92 -0.42 0.92 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.02 7.09 -51.93 -0.37 0.65 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.21 3.24 -51.93 -0.17 1.04 16 LS Contribution 270.86 15.07 4.08 4.08 Total: -1.00 -31.07 270.86 -5.78 -36.85 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.42 Total: -1.82 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.26 Total: -15.76 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.41 Total: -39.42 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.92 Total: -28.89 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.14 Total: 16.12 kcal Atomic # 16 Polarization: 33.95 SS G_CDS: -0.61 Total: 33.34 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.07 -5.78 -36.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397171890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.010 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds