Wall clock time and date at job start Mon Mar 30 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00309 * 2 1 4 4 H 1.48498 * 109.46926 * 270.00220 * 3 2 1 5 5 H 1.48496 * 109.46596 * 30.00399 * 3 2 1 6 6 H 1.48496 * 109.47019 * 150.00125 * 3 2 1 7 7 C 1.37881 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99960 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53040 * 109.46041 * 179.97438 * 9 7 2 11 11 C 1.53185 * 109.31153 * 181.37102 * 10 9 7 12 12 N 1.46930 * 108.77979 * 305.36800 * 11 10 9 13 13 S 1.65599 * 120.63273 * 233.58448 * 12 11 10 14 14 O 1.42106 * 104.27740 * 333.93022 * 13 12 11 15 15 O 1.42092 * 104.27889 * 206.07059 * 13 12 11 16 16 C 1.81399 * 104.44705 * 90.00005 * 13 12 11 17 17 F 1.39905 * 109.47243 * 185.00258 * 16 13 12 18 18 F 1.39898 * 109.47339 * 305.00059 * 16 13 12 19 19 C 1.46930 * 118.73545 * 53.86271 * 12 11 10 20 20 C 1.53042 * 109.45026 * 300.06134 * 9 7 2 21 21 H 0.97004 * 119.99129 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.45918 * 60.02700 * 9 7 2 23 23 H 1.08999 * 109.49082 * 61.42408 * 10 9 7 24 24 H 1.08997 * 109.50059 * 301.32726 * 10 9 7 25 25 H 1.09004 * 109.58698 * 185.57853 * 11 10 9 26 26 H 1.09001 * 109.70613 * 65.22616 * 11 10 9 27 27 H 1.09001 * 109.47190 * 64.99852 * 16 13 12 28 28 H 1.08991 * 109.58955 * 65.92782 * 19 12 11 29 29 H 1.08998 * 109.58430 * 186.35399 * 19 12 11 30 30 H 1.08993 * 109.49626 * 298.57296 * 20 9 7 31 31 H 1.08999 * 109.49538 * 58.66996 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6372 -0.0010 11 6 5.5528 -2.6334 0.0330 12 7 6.0487 -1.8183 -1.0843 13 16 7.1468 -2.4374 -2.1582 14 8 7.8328 -3.4392 -1.4196 15 8 7.8317 -1.2964 -2.6562 16 6 6.1321 -3.1893 -3.4603 17 9 6.9604 -3.8492 -4.3745 18 9 5.2445 -4.1071 -2.8884 19 6 5.5564 -0.4413 -1.2272 20 6 4.0207 -0.4711 -1.2501 21 1 -0.4849 0.8402 0.0004 22 1 3.8750 -0.6810 0.8892 23 1 3.6787 -3.1440 -0.9031 24 1 3.6392 -3.1580 0.8769 25 1 5.9230 -3.6538 -0.0666 26 1 5.8985 -2.2097 0.9759 27 1 5.5684 -2.4119 -3.9761 28 1 5.9002 0.1589 -0.3849 29 1 5.9290 -0.0149 -2.1586 30 1 3.6781 -0.9980 -2.1406 31 1 3.6381 0.5495 -1.2609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397171890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:37 Heat of formation + Delta-G solvation = -178.305038 kcal Electronic energy + Delta-G solvation = -19980.672128 eV Core-core repulsion = 16445.782235 eV Total energy + Delta-G solvation = -3534.889893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.35633 -48.52751 -39.58631 -38.71199 -37.49880 -35.30968 -33.15570 -32.01869 -28.64103 -27.80424 -24.41977 -23.87932 -21.43815 -20.39619 -19.55748 -19.12297 -19.01075 -18.76324 -18.20528 -17.07290 -16.62777 -15.82798 -15.66278 -15.39334 -15.32560 -14.88756 -14.82250 -14.70537 -14.46254 -14.21996 -13.93547 -13.82409 -13.60748 -13.24338 -12.91212 -12.81187 -12.23266 -12.07798 -11.85732 -11.70086 -11.43822 -11.07560 -10.94564 -10.61457 -10.03131 -8.24230 -6.28423 -1.57680 1.08136 1.35098 1.43139 1.53053 2.06403 2.38084 2.46582 2.86015 3.03579 3.11730 3.26543 3.57831 4.13413 4.23928 4.29538 4.48174 4.57104 4.64354 4.79845 4.94368 5.04885 5.12647 5.36190 5.40538 5.62613 5.73581 5.81803 6.37418 6.80474 7.37478 8.92718 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.006759 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.891598 B = 4141.662009 C = 4341.426949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.260 1.260 5 H -0.309 1.309 6 H -0.233 1.233 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.012 3.988 10 C -0.114 4.114 11 C 0.120 3.880 12 N -0.970 5.970 13 S 2.613 3.387 14 O -0.935 6.935 15 O -0.924 6.924 16 C -0.244 4.244 17 F -0.181 7.181 18 F -0.174 7.174 19 C 0.113 3.887 20 C -0.142 4.142 21 H 0.263 0.737 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.183 0.817 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.462 -2.278 -5.216 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.238 1.238 6 H -0.156 1.156 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.007 4.007 10 C -0.153 4.153 11 C -0.005 4.005 12 N -0.811 5.811 13 S 2.693 3.307 14 O -0.924 6.924 15 O -0.914 6.914 16 C -0.379 4.379 17 F -0.163 7.163 18 F -0.155 7.155 19 C -0.012 4.012 20 C -0.181 4.181 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.200 0.800 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.222 -2.240 -5.233 17.192 hybrid contribution -1.456 0.295 -0.492 1.565 sum 14.766 -1.945 -5.724 15.956 Atomic orbital electron populations 1.70087 1.08578 1.27875 1.53176 1.25997 0.95386 1.03400 0.94385 0.85879 0.79628 0.78148 0.79001 1.18614 1.23766 1.15584 1.21446 0.91929 0.92647 1.49445 0.95299 1.19098 0.92979 0.94333 0.94308 1.21784 0.94094 0.97428 1.02011 1.21760 0.94182 0.95436 0.89081 1.57631 1.63195 1.21807 1.38480 1.05997 0.75135 0.74539 0.75004 1.93609 1.69716 1.61824 1.67291 1.93650 1.69136 1.47347 1.81236 1.33952 0.99843 0.96377 1.07691 1.93021 1.71549 1.83088 1.68624 1.93062 1.69345 1.68603 1.84538 1.21922 0.93847 0.80403 1.05005 1.22423 0.94560 1.00273 1.00862 0.92860 0.94845 0.92618 0.91366 0.88018 0.88630 0.79991 0.88780 0.86920 0.91543 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.21 13.96 21.45 0.30 -57.91 16 2 C 0.00 0.24 5.45 84.65 0.46 0.71 16 3 Si 0.95 41.15 24.38 68.60 1.67 42.83 16 4 H -0.26 -10.49 6.85 99.48 0.68 -9.81 16 5 H -0.31 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.23 -8.87 6.53 99.48 0.65 -8.22 16 7 C -0.52 -27.35 9.14 25.60 0.23 -27.12 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 9 C 0.01 0.47 1.65 -11.51 -0.02 0.45 16 10 C -0.11 -3.76 5.30 30.67 0.16 -3.59 16 11 C 0.12 3.01 6.31 86.36 0.55 3.56 16 12 N -0.97 -23.48 3.22 -512.29 -1.65 -25.13 16 13 S 2.61 59.85 5.65 -56.49 -0.32 59.53 16 14 O -0.93 -25.76 16.73 -127.65 -2.14 -27.90 16 15 O -0.92 -23.03 16.71 -127.65 -2.13 -25.16 16 16 C -0.24 -5.20 6.13 113.37 0.70 -4.50 16 17 F -0.18 -4.23 17.38 44.97 0.78 -3.45 16 18 F -0.17 -4.49 17.38 44.97 0.78 -3.71 16 19 C 0.11 2.79 6.34 86.51 0.55 3.33 16 20 C -0.14 -4.80 4.86 30.82 0.15 -4.65 16 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 22 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.10 2.28 7.10 -2.38 -0.02 2.26 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.18 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 2.18 7.09 -2.39 -0.02 2.16 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.84 3.24 -2.39 -0.01 1.83 16 Total: -1.00 -68.49 270.86 1.15 -67.34 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.07 Total: 5.38 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 2.78 Total: -31.81 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.35 Total: -83.04 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -4.27 Total: -53.06 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 1.56 Total: -7.16 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.67 Total: 42.83 kcal Atomic # 16 Polarization: 59.85 SS G_CDS: -0.32 Total: 59.53 kcal Total: -68.49 1.15 -67.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397171890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.963 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds