Wall clock time and date at job start Mon Mar 30 2020 01:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47263 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47123 * 29.99826 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99902 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38232 * 119.99623 * 259.73072 * 13 12 11 15 15 C 1.38199 * 120.03360 * 179.72408 * 14 13 12 16 16 C 1.38390 * 120.04216 * 0.54628 * 15 14 13 17 17 Cl 1.73593 * 120.00579 * 179.74789 * 16 15 14 18 18 C 1.38299 * 119.99558 * 359.72706 * 16 15 14 19 19 C 1.38440 * 120.00182 * 80.00091 * 13 12 11 20 20 F 1.35099 * 120.01728 * 359.97438 * 19 13 12 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07995 * 119.98145 * 359.97438 * 14 13 12 29 29 H 1.08004 * 119.98135 * 180.27187 * 15 14 13 30 30 H 1.07991 * 120.01795 * 180.02562 * 18 16 15 31 31 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 32 32 H 1.08992 * 113.86038 * 139.01836 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.3797 -6.5800 -3.3127 15 6 -0.5409 -6.8860 -4.2970 16 6 -0.9586 -5.9084 -5.1830 17 17 -2.1100 -6.2955 -6.4231 18 6 -0.4590 -4.6229 -5.0802 19 6 0.4590 -4.3150 -4.0905 20 9 0.9474 -3.0595 -3.9886 21 6 2.1611 -3.7399 -0.0455 22 1 -0.4850 0.8400 -0.0004 23 1 0.4835 -2.5465 0.7729 24 1 -0.3212 -2.8279 -1.5258 25 1 1.3294 -2.4995 -2.2139 26 1 2.6375 -4.2949 -2.5327 27 1 2.3447 -5.8766 -1.7705 28 1 0.7087 -7.3447 -2.6248 29 1 -0.9312 -7.8898 -4.3777 30 1 -0.7851 -3.8597 -5.7711 31 1 3.1447 -3.5475 -0.4741 32 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:26 Heat of formation + Delta-G solvation = 7.255895 kcal Electronic energy + Delta-G solvation = -18064.252747 eV Core-core repulsion = 14966.134898 eV Total energy + Delta-G solvation = -3098.117848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.81943 -39.44699 -38.35350 -36.58507 -33.03875 -31.90594 -30.70693 -28.38682 -25.58267 -24.98248 -23.03742 -22.87925 -20.92655 -18.65957 -17.76627 -16.84756 -16.37491 -15.88842 -15.62539 -14.81800 -14.67348 -14.29024 -13.93863 -13.79736 -13.63381 -13.24630 -12.90697 -12.09254 -11.82801 -11.75217 -11.50414 -11.33608 -11.12774 -10.98938 -10.91362 -10.60859 -10.31671 -9.70116 -9.33447 -9.01061 -8.97396 -8.56797 -8.37422 -7.87122 -6.03010 -4.07635 0.95416 1.08206 1.91728 3.30096 3.36970 3.38906 3.40251 4.31689 4.41994 4.60952 4.72045 4.85183 5.02841 5.14667 5.27873 5.43055 5.60314 5.80598 5.90202 5.94129 6.05375 6.07615 6.32782 6.37009 6.52228 6.65347 6.69939 6.81222 7.15608 7.23013 7.74152 7.90796 8.05023 8.38171 8.94406 9.57231 11.06542 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.029207 B = 0.004719 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.430585 B = 5932.069389 C = 6496.277796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.038 3.962 10 C 0.002 3.998 11 N -0.487 5.487 12 C 0.056 3.944 13 C -0.093 4.093 14 C -0.067 4.067 15 C -0.124 4.124 16 C -0.014 4.014 17 Cl -0.068 7.068 18 C -0.149 4.149 19 C 0.125 3.875 20 F -0.118 7.118 21 C -0.001 4.001 22 H 0.261 0.739 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.056 0.944 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 -13.247 -10.198 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.126 4.126 11 N -0.210 5.210 12 C -0.072 4.072 13 C -0.094 4.094 14 C -0.086 4.086 15 C -0.143 4.143 16 C -0.041 4.041 17 Cl -0.039 7.039 18 C -0.169 4.169 19 C 0.104 3.896 20 F -0.096 7.096 21 C -0.130 4.130 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.074 0.926 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.180 -13.600 -10.090 16.975 hybrid contribution 0.926 1.670 -0.586 1.997 sum -0.254 -11.930 -10.677 16.012 Atomic orbital electron populations 1.69963 1.05981 1.26688 1.49675 1.24995 0.94793 0.99080 0.94664 0.86642 0.79942 0.83565 0.78147 1.20645 1.21156 1.19838 1.21072 0.92728 0.90361 1.51511 0.92479 1.20308 0.93661 0.90998 0.93106 1.24484 1.00254 0.86020 1.01890 1.68747 1.25785 1.17815 1.08639 1.21551 0.93635 1.00606 0.91391 1.20089 0.99831 0.93150 0.96373 1.20866 0.95288 0.95576 0.96898 1.21038 0.98818 0.99254 0.95196 1.20526 0.95683 0.94292 0.93612 1.98367 1.58612 1.94250 1.52669 1.20937 0.99054 0.96610 1.00272 1.17384 0.95806 0.80268 0.96093 1.91547 1.85851 1.37177 1.95003 1.24089 0.95282 0.98046 0.95565 0.92902 0.92459 0.91901 0.90713 0.93182 0.90183 0.84096 0.84497 0.83848 0.92569 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.22 8.77 -34.44 -0.30 -14.52 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 0.97 3.60 -90.84 -0.33 0.64 16 10 C 0.00 0.04 5.84 -2.57 -0.02 0.03 16 11 N -0.49 -9.79 6.26 -239.49 -1.50 -11.29 16 12 C 0.06 0.93 4.89 -4.97 -0.02 0.90 16 13 C -0.09 -1.41 5.29 -104.55 -0.55 -1.96 16 14 C -0.07 -0.82 9.67 -39.60 -0.38 -1.21 16 15 C -0.12 -1.40 9.83 -39.54 -0.39 -1.78 16 16 C -0.01 -0.17 6.32 -39.50 -0.25 -0.42 16 17 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 18 C -0.15 -2.05 9.81 -39.48 -0.39 -2.44 16 19 C 0.12 2.00 6.72 -39.43 -0.26 1.73 16 20 F -0.12 -2.18 13.32 2.25 0.03 -2.15 16 21 C 0.00 -0.03 7.53 -2.76 -0.02 -0.05 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 24 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.07 1.80 5.26 -51.93 -0.27 1.52 16 26 H 0.05 0.87 7.50 -51.93 -0.39 0.48 16 27 H 0.08 1.12 8.00 -51.92 -0.42 0.70 16 28 H 0.14 1.39 8.03 -52.49 -0.42 0.97 16 29 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.06 1.14 7.74 -51.92 -0.40 0.74 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -28.91 289.59 -9.46 -38.38 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.56 Total: -0.89 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.01 Total: -17.30 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.76 Total: -36.37 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.91 -9.46 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.631 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds