Wall clock time and date at job start Mon Mar 30 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47263 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47123 * 29.99826 * 3 2 1 6 6 H 1.48502 * 109.47383 * 149.99902 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.38232 * 119.99623 * 259.73072 * 13 12 11 15 15 C 1.38199 * 120.03360 * 179.72408 * 14 13 12 16 16 C 1.38390 * 120.04216 * 0.54628 * 15 14 13 17 17 Cl 1.73593 * 120.00579 * 179.74789 * 16 15 14 18 18 C 1.38299 * 119.99558 * 359.72706 * 16 15 14 19 19 C 1.38440 * 120.00182 * 80.00091 * 13 12 11 20 20 F 1.35099 * 120.01728 * 359.97438 * 19 13 12 21 21 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 22 22 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 24 24 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 25 25 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 26 26 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 27 27 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 28 28 H 1.07995 * 119.98145 * 359.97438 * 14 13 12 29 29 H 1.08004 * 119.98135 * 180.27187 * 15 14 13 30 30 H 1.07991 * 120.01795 * 180.02562 * 18 16 15 31 31 H 1.09007 * 113.75652 * 270.36911 * 21 11 10 32 32 H 1.08992 * 113.86038 * 139.01836 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.3797 -6.5800 -3.3127 15 6 -0.5409 -6.8860 -4.2970 16 6 -0.9586 -5.9084 -5.1830 17 17 -2.1100 -6.2955 -6.4231 18 6 -0.4590 -4.6229 -5.0802 19 6 0.4590 -4.3150 -4.0905 20 9 0.9474 -3.0595 -3.9886 21 6 2.1611 -3.7399 -0.0455 22 1 -0.4850 0.8400 -0.0004 23 1 0.4835 -2.5465 0.7729 24 1 -0.3212 -2.8279 -1.5258 25 1 1.3294 -2.4995 -2.2139 26 1 2.6375 -4.2949 -2.5327 27 1 2.3447 -5.8766 -1.7705 28 1 0.7087 -7.3447 -2.6248 29 1 -0.9312 -7.8898 -4.3777 30 1 -0.7851 -3.8597 -5.7711 31 1 3.1447 -3.5475 -0.4741 32 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:25 Heat of formation + Delta-G solvation = -10.313195 kcal Electronic energy + Delta-G solvation = -18065.014599 eV Core-core repulsion = 14966.134898 eV Total energy + Delta-G solvation = -3098.879701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.11133 -40.77362 -39.76374 -37.53833 -34.88353 -33.39553 -31.74029 -29.97057 -27.33790 -26.74455 -24.53906 -23.99786 -22.22691 -20.47631 -19.02580 -18.57406 -17.68769 -17.12719 -16.98068 -16.50243 -16.22244 -15.78933 -15.59252 -15.06400 -14.76990 -14.27527 -14.24640 -13.88580 -13.45893 -13.18900 -12.93772 -12.76723 -12.69290 -12.37099 -12.30362 -12.05420 -11.94271 -11.54289 -11.17297 -10.95052 -10.51919 -10.02080 -9.78155 -9.45942 -8.15428 -6.26963 -0.09876 0.05787 0.96219 1.40946 1.41183 1.51900 2.34707 2.42127 3.14442 3.22649 3.31177 3.57747 3.63643 3.91196 4.09953 4.29541 4.36513 4.45662 4.52466 4.63783 4.75680 4.83764 4.88541 4.95283 4.97477 5.07409 5.23879 5.27416 5.49217 5.62396 5.67879 5.84770 6.29158 6.32770 6.81952 7.41501 8.94232 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.029207 B = 0.004719 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.430585 B = 5932.069389 C = 6496.277796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.019 3.981 11 N -0.482 5.482 12 C 0.058 3.942 13 C -0.112 4.112 14 C -0.058 4.058 15 C -0.112 4.112 16 C -0.016 4.016 17 Cl -0.053 7.053 18 C -0.156 4.156 19 C 0.092 3.908 20 F -0.143 7.143 21 C 0.015 3.985 22 H 0.262 0.738 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.114 0.886 28 H 0.173 0.827 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -15.200 -10.717 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.110 4.110 11 N -0.204 5.204 12 C -0.070 4.070 13 C -0.114 4.114 14 C -0.077 4.077 15 C -0.130 4.130 16 C -0.043 4.043 17 Cl -0.024 7.024 18 C -0.175 4.175 19 C 0.072 3.928 20 F -0.121 7.121 21 C -0.113 4.113 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.190 0.810 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.503 -15.570 -10.612 18.850 hybrid contribution 0.652 2.161 -0.485 2.309 sum 0.150 -13.409 -11.098 17.407 Atomic orbital electron populations 1.70097 1.07577 1.27488 1.50961 1.25821 0.95576 1.02696 0.94385 0.85596 0.78933 0.79173 0.78234 1.20281 1.20846 1.18675 1.21441 0.93040 0.91606 1.50989 0.92223 1.20333 0.94245 0.92556 0.93226 1.24087 0.98223 0.88362 1.00321 1.68628 1.26216 1.15721 1.09881 1.21598 0.93652 1.01211 0.90565 1.20134 1.00604 0.94377 0.96259 1.21215 0.94478 0.94772 0.97217 1.21441 0.97485 1.00369 0.93711 1.20694 0.95565 0.93929 0.94073 1.98377 1.57923 1.94028 1.52037 1.21032 0.98790 0.97715 0.99992 1.17771 0.97464 0.79724 0.97876 1.91468 1.86451 1.38913 1.95316 1.23939 0.94824 0.95773 0.96783 0.92946 0.95874 0.94718 0.91619 0.94340 0.86754 0.81001 0.81096 0.83426 0.91739 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.47 13.29 21.45 0.28 -55.18 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.53 -29.74 8.77 25.60 0.22 -29.51 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 0.81 3.60 -10.89 -0.04 0.77 16 10 C 0.02 0.92 5.84 86.34 0.50 1.42 16 11 N -0.48 -19.14 6.26 -911.60 -5.71 -24.84 16 12 C 0.06 1.81 4.89 85.56 0.42 2.23 16 13 C -0.11 -3.27 5.29 -19.82 -0.10 -3.37 16 14 C -0.06 -1.24 9.67 22.26 0.22 -1.02 16 15 C -0.11 -2.12 9.83 22.30 0.22 -1.90 16 16 C -0.02 -0.35 6.32 22.32 0.14 -0.21 16 17 Cl -0.05 -1.03 28.96 -2.72 -0.08 -1.11 16 18 C -0.16 -4.24 9.81 22.34 0.22 -4.02 16 19 C 0.09 2.96 6.72 22.37 0.15 3.11 16 20 F -0.14 -5.57 13.32 44.97 0.60 -4.97 16 21 C 0.02 0.62 7.53 86.41 0.65 1.27 16 22 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 3.30 5.26 -2.39 -0.01 3.28 16 26 H 0.04 1.31 7.50 -2.39 -0.02 1.29 16 27 H 0.11 2.81 8.00 -2.38 -0.02 2.79 16 28 H 0.17 2.55 8.03 -2.91 -0.02 2.52 16 29 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.15 3.71 8.06 -2.92 -0.02 3.69 16 31 H 0.06 2.53 7.74 -2.38 -0.02 2.51 16 32 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -64.23 289.59 1.32 -62.91 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.13 Total: 7.03 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.06 Total: -29.95 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -5.42 Total: -80.03 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.60 Total: -4.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -64.23 1.32 -62.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.599 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds