Wall clock time and date at job start Mon Mar 30 2020 01:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00040 * 2 1 4 4 C 1.50695 * 109.47635 * 270.00274 * 3 2 1 5 5 O 1.21303 * 119.99703 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00421 * 179.97438 * 4 3 2 7 7 C 1.37106 * 119.99879 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00152 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99695 * 180.02562 * 7 6 4 10 10 N 1.31416 * 120.00262 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47110 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47213 * 119.99619 * 11 9 7 14 14 H 1.48494 * 109.47492 * 240.00118 * 11 9 7 15 15 C 1.39069 * 119.99984 * 180.02562 * 2 1 3 16 16 C 1.39126 * 119.69035 * 4.99992 * 15 2 1 17 17 C 1.38299 * 119.10836 * 179.97438 * 16 15 2 18 18 C 1.38971 * 118.49651 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 120.34788 * 180.02562 * 18 17 16 20 20 C 1.38123 * 119.30497 * 0.02562 * 18 17 16 21 21 N 1.31984 * 120.83732 * 359.97438 * 20 18 17 22 22 H 1.09004 * 109.46456 * 269.99737 * 1 2 3 23 23 H 1.09001 * 109.47079 * 29.99381 * 1 2 3 24 24 H 1.08995 * 109.47332 * 150.00095 * 1 2 3 25 25 H 1.09004 * 109.47279 * 30.00577 * 3 2 1 26 26 H 1.09003 * 109.46970 * 149.99881 * 3 2 1 27 27 H 0.96996 * 120.00354 * 0.02562 * 6 4 3 28 28 H 0.96998 * 120.00154 * 180.02562 * 10 9 7 29 29 H 1.07996 * 120.44185 * 0.02562 * 16 15 2 30 30 H 1.07997 * 120.75538 * 180.02562 * 17 16 15 31 31 H 1.07998 * 119.58572 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4207 5 8 2.0549 1.0210 -2.3428 6 7 3.1107 2.8516 -1.6670 7 6 3.3396 3.2472 -2.9596 8 1 2.9891 2.6392 -3.7805 9 6 4.0227 4.4302 -3.2134 10 7 4.4497 5.1698 -2.2146 11 14 4.3340 4.9696 -4.9746 12 1 3.7559 3.9698 -5.9080 13 1 3.6964 6.2903 -5.2078 14 1 5.7965 5.0779 -5.2080 15 6 2.1603 -1.2044 -0.0005 16 6 1.4622 -2.4031 -0.1064 17 6 2.1658 -3.5937 -0.1063 18 6 3.5505 -3.5456 0.0008 19 17 4.4815 -5.0109 0.0053 20 6 4.1784 -2.3196 0.1037 21 7 3.4802 -1.1995 0.1008 22 1 -0.3632 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6085 2.0284 0.5139 26 1 3.1499 1.1383 0.5139 27 1 3.4259 3.3975 -0.9297 28 1 4.9262 5.9959 -2.3918 29 1 0.3853 -2.4038 -0.1884 30 1 1.6509 -4.5396 -0.1875 31 1 5.2543 -2.2769 0.1875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544358.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:59 Heat of formation + Delta-G solvation = 8.224720 kcal Electronic energy + Delta-G solvation = -17754.663988 eV Core-core repulsion = 14676.508112 eV Total energy + Delta-G solvation = -3078.155875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22093 -38.25748 -36.62193 -35.71427 -33.84925 -32.39310 -31.26628 -30.09882 -28.47935 -25.72367 -24.41510 -23.28771 -21.58214 -19.32526 -17.98397 -17.50232 -16.54684 -16.18731 -16.05614 -14.81052 -14.72252 -14.36334 -14.19296 -13.72699 -13.52334 -13.33589 -13.03609 -12.47113 -12.25581 -11.95283 -11.86336 -11.54139 -11.37168 -11.12143 -11.02116 -10.34919 -10.23789 -9.79311 -9.73097 -9.52441 -9.29286 -8.48278 -7.97111 -7.29681 -6.41558 -3.82608 1.29589 1.39372 2.23837 3.07358 3.15994 3.26817 3.34289 3.89124 3.94357 4.18749 4.55697 4.84598 4.99309 5.04305 5.14273 5.24164 5.30182 5.51621 5.65541 5.72560 5.83936 5.91661 5.94392 6.07658 6.27288 6.46934 7.01890 7.45859 7.55063 8.05065 8.23341 8.60652 9.17649 9.53452 10.04513 10.75751 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.004361 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.637712 B = 6418.613229 C = 7067.647694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.579 5.579 3 C 0.112 3.888 4 C 0.426 3.574 5 O -0.588 6.588 6 N -0.561 5.561 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.023 3.977 10 N -0.900 5.900 11 Si 0.928 3.072 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.425 3.575 16 C -0.232 4.232 17 C -0.024 4.024 18 C -0.162 4.162 19 Cl -0.078 7.078 20 C 0.172 3.828 21 N -0.524 5.524 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.393 0.607 28 H 0.271 0.729 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -13.053 8.532 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.289 5.289 3 C -0.014 4.014 4 C 0.210 3.790 5 O -0.473 6.473 6 N -0.197 5.197 7 C -0.428 4.428 8 H 0.119 0.881 9 C -0.178 4.178 10 N -0.542 5.542 11 Si 0.756 3.244 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.190 3.810 16 C -0.257 4.257 17 C -0.050 4.050 18 C -0.194 4.194 19 Cl -0.049 7.049 20 C 0.012 3.988 21 N -0.241 5.241 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.226 0.774 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.575 -12.442 7.976 15.471 hybrid contribution 0.085 -0.160 -0.633 0.658 sum -4.490 -12.602 7.343 15.261 Atomic orbital electron populations 1.21712 0.78262 1.03695 1.00780 1.45917 1.05011 1.02241 1.75681 1.21245 0.98611 0.84746 0.96845 1.20408 0.84406 0.83563 0.90599 1.90519 1.55865 1.55247 1.45680 1.41860 1.49241 1.19718 1.08897 1.19728 1.33503 1.05231 0.84307 0.88051 1.25250 0.96873 0.96143 0.99579 1.69618 1.38650 1.14763 1.31139 0.85816 0.78061 0.78486 0.82079 1.19303 1.20740 1.20692 1.18365 0.88228 0.86085 0.88347 1.21371 1.01325 0.90975 1.12075 1.21121 0.91782 0.98554 0.93531 1.21569 0.92833 0.88401 1.16643 1.98327 1.73369 1.35654 1.97591 1.22377 0.99927 0.85096 0.91403 1.67342 1.06451 1.29833 1.20468 0.92927 0.90604 0.91203 0.89315 0.87855 0.77406 0.91901 0.84312 0.84415 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 10.28 59.85 0.62 1.85 16 2 N -0.58 -9.55 2.48 -183.09 -0.45 -10.00 16 3 C 0.11 2.01 5.95 -5.20 -0.03 1.98 16 4 C 0.43 10.11 7.85 -10.99 -0.09 10.03 16 5 O -0.59 -16.18 16.01 5.54 0.09 -16.09 16 6 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 10 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.43 7.12 7.37 -154.98 -1.14 5.98 16 16 C -0.23 -3.18 9.27 -39.23 -0.36 -3.54 16 17 C -0.02 -0.30 9.97 -39.29 -0.39 -0.69 16 18 C -0.16 -2.18 6.34 -39.35 -0.25 -2.42 16 19 Cl -0.08 -0.91 28.99 -51.86 -1.50 -2.41 16 20 C 0.17 2.57 10.97 -17.53 -0.19 2.38 16 21 N -0.52 -9.23 9.08 -12.40 -0.11 -9.34 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 24 H 0.07 0.79 5.98 -51.93 -0.31 0.48 16 25 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 26 H 0.10 1.83 7.30 -51.93 -0.38 1.45 16 27 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.14 1.54 6.02 -52.49 -0.32 1.23 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -32.77 292.01 -6.96 -39.73 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -2.94 Total: 8.12 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -2.08 Total: 7.56 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.10 Total: -57.49 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.77 -6.96 -39.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544358.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.955 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds