Wall clock time and date at job start Mon Mar 30 2020 01:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08988 * 109.46932 * 2 1 4 4 C 1.50699 * 109.47013 * 120.00150 * 2 1 3 5 5 H 1.08003 * 120.00502 * 119.99855 * 4 2 1 6 6 C 1.37878 * 120.00192 * 300.00146 * 4 2 1 7 7 N 1.31523 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00244 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47442 * 89.99828 * 8 6 4 10 10 H 1.48502 * 109.46874 * 209.99480 * 8 6 4 11 11 H 1.48496 * 109.47226 * 329.99422 * 8 6 4 12 12 N 1.46500 * 109.47103 * 239.99903 * 2 1 3 13 13 C 1.46500 * 119.99989 * 299.99849 * 12 2 1 14 14 C 1.34771 * 120.00013 * 120.00125 * 12 2 1 15 15 O 1.21522 * 119.99948 * 2.93823 * 14 12 2 16 16 C 1.48068 * 120.00050 * 182.94229 * 14 12 2 17 17 N 1.33029 * 120.10909 * 353.78155 * 16 14 12 18 18 C 1.31755 * 119.94383 * 179.97438 * 17 16 14 19 19 C 1.38784 * 120.16551 * 0.02562 * 18 17 16 20 20 N 1.32098 * 120.21333 * 359.97438 * 19 18 17 21 21 C 1.32233 * 120.05940 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.08519 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.46987 * 299.99615 * 1 2 3 24 24 H 1.08997 * 109.47292 * 60.00149 * 1 2 3 25 25 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 26 26 H 0.96999 * 120.00268 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47694 * 263.86319 * 13 12 2 28 28 H 1.09001 * 109.47165 * 23.86487 * 13 12 2 29 29 H 1.09006 * 109.46905 * 143.86361 * 13 12 2 30 30 H 1.08004 * 119.92214 * 180.02562 * 18 17 16 31 31 H 1.07990 * 119.89097 * 179.72132 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6304 -0.5442 4.4119 10 1 1.3444 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1309 1.1110 -1.8648 16 6 3.2329 -0.7133 -3.3242 17 7 2.9698 -2.0042 -3.5088 18 6 3.3621 -2.6038 -4.6145 19 6 4.0500 -1.8921 -5.5874 20 7 4.3148 -0.6100 -5.4106 21 6 3.9250 0.0004 -4.3042 22 17 4.2720 1.6854 -4.0716 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7094 1.1618 3.4844 27 1 2.4685 -2.7352 -1.0681 28 1 0.7444 -2.3290 -0.8931 29 1 1.5171 -2.2591 -2.4952 30 1 3.1479 -3.6517 -4.7642 31 1 4.3735 -2.3890 -6.4899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703358605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:12 Heat of formation + Delta-G solvation = 17.303395 kcal Electronic energy + Delta-G solvation = -18421.241050 eV Core-core repulsion = 15343.478855 eV Total energy + Delta-G solvation = -3077.762194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44557 -40.35854 -37.90052 -37.15717 -35.78392 -34.59056 -32.69258 -31.13152 -27.77608 -27.31496 -26.52423 -25.60682 -23.28636 -20.82840 -19.20892 -18.55386 -18.39544 -17.84733 -17.23677 -16.87169 -16.43249 -15.82013 -15.53263 -14.93601 -14.52704 -14.18761 -14.01615 -13.82105 -13.48225 -13.27766 -12.98553 -12.79002 -12.72244 -12.45367 -12.26529 -12.19882 -12.06435 -11.86514 -11.20200 -11.04768 -10.53341 -10.36315 -9.97700 -9.32090 -8.14595 -6.31008 -0.83591 -0.23067 0.61834 1.41500 1.42859 1.52864 1.73046 2.05800 2.42724 2.55493 2.89303 3.11821 3.13597 3.17902 3.87278 3.89095 4.30033 4.56918 4.79817 4.86379 4.89537 5.02624 5.07136 5.29657 5.44228 5.60676 5.66840 5.86071 6.00558 6.14788 6.37125 6.72177 6.75028 7.19626 7.41665 8.89792 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.005693 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.020099 B = 4916.813416 C = 5356.676147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.263 1.263 12 N -0.576 5.576 13 C 0.087 3.913 14 C 0.538 3.462 15 O -0.562 6.562 16 C 0.035 3.965 17 N -0.404 5.404 18 C 0.063 3.937 19 C 0.108 3.892 20 N -0.454 5.454 21 C 0.150 3.850 22 Cl 0.002 6.998 23 H 0.071 0.929 24 H 0.021 0.979 25 H 0.048 0.952 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.240 0.760 31 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -10.794 -16.919 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.034 0.966 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.187 1.187 12 N -0.305 5.305 13 C -0.055 4.055 14 C 0.324 3.676 15 O -0.442 6.442 16 C -0.104 4.104 17 N -0.122 5.122 18 C -0.101 4.101 19 C -0.055 4.055 20 N -0.171 5.171 21 C -0.015 4.015 22 Cl 0.030 6.970 23 H 0.090 0.910 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.256 0.744 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.575 -9.838 -16.540 19.574 hybrid contribution 0.313 0.315 1.126 1.210 sum 3.889 -9.523 -15.414 18.531 Atomic orbital electron populations 1.21884 0.96766 1.00259 1.00137 1.18677 0.91851 0.92429 0.81189 0.96641 1.21519 1.31996 1.13025 0.91094 0.92458 1.25712 0.95023 0.95658 1.01900 1.70014 1.37182 1.23782 1.24494 0.85456 0.77822 0.79163 0.78583 1.20869 1.20315 1.18694 1.48178 1.47109 1.13720 1.21447 1.22294 1.00049 0.79402 1.03796 1.18153 0.80257 0.85885 0.83338 1.90800 1.57657 1.18485 1.77245 1.21640 1.00499 0.92324 0.95927 1.69073 1.14637 1.06085 1.22420 1.25166 0.92594 1.04259 0.88061 1.25104 0.91390 0.87489 1.01503 1.68089 1.17910 1.12658 1.18476 1.22638 0.96181 0.90356 0.92290 1.98458 1.92863 1.09938 1.95718 0.91041 0.96016 0.93312 0.92551 0.93297 0.92045 0.86712 0.74402 0.74471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.96 71.98 0.64 -5.84 16 2 C 0.26 13.91 2.62 44.25 0.12 14.03 16 3 H 0.02 0.98 6.90 -2.39 -0.02 0.96 16 4 C -0.54 -29.97 8.37 25.60 0.21 -29.76 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.58 -26.01 2.75 -829.97 -2.28 -28.29 16 13 C 0.09 3.05 8.58 127.77 1.10 4.15 16 14 C 0.54 24.05 7.64 86.85 0.66 24.71 16 15 O -0.56 -28.91 13.34 -3.78 -0.05 -28.96 16 16 C 0.03 1.18 6.63 41.90 0.28 1.46 16 17 N -0.40 -10.28 6.18 -184.25 -1.14 -11.42 16 18 C 0.06 0.85 11.22 84.84 0.95 1.80 16 19 C 0.11 1.41 11.23 84.78 0.95 2.36 16 20 N -0.45 -10.98 10.48 -184.97 -1.94 -12.92 16 21 C 0.15 4.78 7.32 84.96 0.62 5.40 16 22 Cl 0.00 0.05 26.21 -2.72 -0.07 -0.02 16 23 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 2.18 6.67 -2.39 -0.02 2.16 16 26 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.17 6.44 -2.39 -0.02 2.15 16 29 H 0.12 3.36 5.16 -4.26 -0.02 3.34 16 30 H 0.24 0.43 8.06 -2.91 -0.02 0.41 16 31 H 0.24 0.29 8.06 -2.92 -0.02 0.26 16 Total: -1.00 -74.64 278.62 3.93 -70.71 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: 1.16 Total: -1.50 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.99 Total: 19.68 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -5.12 Total: -105.58 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.07 Total: -0.02 kcal Total: -74.64 3.93 -70.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703358605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.009 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds