Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34655 * 116.99756 * 2 1 4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.48229 * 119.99646 * 179.97438 * 3 2 1 6 6 C 1.42162 * 126.84185 * 179.71041 * 5 3 2 7 7 C 1.36751 * 103.78634 * 179.91242 * 6 5 3 8 8 C 1.47365 * 126.83958 * 180.10733 * 7 6 5 9 9 O 1.21506 * 119.99415 * 0.25704 * 8 7 6 10 10 O 1.34782 * 120.00096 * 180.26048 * 8 7 6 11 11 C 1.45201 * 116.99566 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46457 * 179.97438 * 11 10 8 13 13 C 1.50707 * 109.46750 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99700 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00337 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99992 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47454 * 89.99717 * 17 15 13 19 19 H 1.48502 * 109.47122 * 209.99844 * 17 15 13 20 20 H 1.48502 * 109.47325 * 329.99668 * 17 15 13 21 21 O 1.34648 * 106.32429 * 0.34728 * 7 6 5 22 22 N 1.20871 * 111.75100 * 359.76119 * 21 7 6 23 23 H 1.08996 * 109.47465 * 300.00024 * 1 2 3 24 24 H 1.08999 * 109.47008 * 60.00033 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.07999 * 128.10796 * 0.03447 * 6 5 3 27 27 H 1.08997 * 109.47277 * 299.99205 * 11 10 8 28 28 H 1.08998 * 109.47094 * 60.00248 * 11 10 8 29 29 H 1.09000 * 109.47336 * 299.99552 * 12 11 10 30 30 H 1.08990 * 109.47317 * 60.00136 * 12 11 10 31 31 H 0.96997 * 120.00871 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4020 2.2179 -0.0005 5 6 3.5435 1.2774 0.0006 6 6 4.3352 2.4581 -0.0051 7 6 5.6198 1.9891 0.0002 8 6 6.8542 2.7940 -0.0001 9 8 6.7883 4.0072 -0.0008 10 8 8.0563 2.1843 0.0004 11 6 9.2293 3.0400 0.0006 12 6 10.4914 2.1750 0.0017 13 6 11.7090 3.0631 0.0026 14 1 11.5941 4.1369 0.0020 15 6 12.9696 2.5046 0.0042 16 7 14.0321 3.2795 0.0045 17 14 13.1682 0.6472 0.0061 18 1 13.2221 0.1537 -1.3935 19 1 14.4259 0.2846 0.7075 20 1 12.0147 0.0267 0.7057 21 8 5.5322 0.6455 0.0004 22 7 4.3827 0.2716 0.0007 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 4.0006 3.4849 -0.0102 27 1 9.2204 3.6690 -0.8895 28 1 9.2198 3.6693 0.8905 29 1 10.5002 1.5462 0.8921 30 1 10.5012 1.5454 -0.8879 31 1 14.9190 2.8867 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781276482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = -100.281738 kcal Electronic energy + Delta-G solvation = -19195.497487 eV Core-core repulsion = 15639.634502 eV Total energy + Delta-G solvation = -3555.862984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.67279 -40.84170 -40.23522 -37.11261 -36.64784 -34.65855 -33.43711 -32.70817 -30.82158 -28.63272 -26.15686 -25.42932 -24.23379 -22.85322 -20.99438 -20.75792 -19.12644 -18.46761 -17.93505 -17.30600 -17.02482 -16.85331 -16.40942 -16.21351 -15.91431 -14.42336 -14.22958 -14.14999 -13.89546 -13.68856 -13.45436 -12.74930 -12.59830 -12.33512 -11.72830 -11.44831 -11.41869 -11.37972 -11.17990 -11.09371 -10.80521 -10.36203 -10.28195 -10.01790 -9.83651 -9.41692 -8.66674 -6.17195 -4.19490 0.15755 0.57995 1.77855 1.94336 2.24507 2.51487 2.87808 3.26214 3.31731 3.34152 3.37966 4.08535 4.35209 4.36678 4.47778 4.59756 4.69292 4.79166 5.03823 5.16379 5.21982 5.63254 5.71407 5.81896 6.30269 6.37924 6.93665 7.02073 7.12846 7.29415 7.54035 7.67581 8.33414 8.83540 9.41766 10.95055 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.047799 B = 0.003118 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.649766 B = 8977.281687 C = 9537.182221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.557 3.443 4 O -0.481 6.481 5 C -0.026 4.026 6 C -0.094 4.094 7 C -0.048 4.048 8 C 0.550 3.450 9 O -0.474 6.474 10 O -0.341 6.341 11 C 0.082 3.918 12 C -0.011 4.011 13 C -0.530 4.530 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.881 3.119 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.262 1.262 21 O 0.176 5.824 22 N -0.283 5.283 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.202 0.798 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.536 -6.665 0.007 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C 0.398 3.602 4 O -0.366 6.366 5 C -0.181 4.181 6 C -0.116 4.116 7 C -0.112 4.112 8 C 0.390 3.610 9 O -0.362 6.362 10 O -0.257 6.257 11 C 0.010 3.990 12 C -0.048 4.048 13 C -0.568 4.568 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.707 3.293 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.186 1.186 21 O 0.084 5.916 22 N 0.026 4.974 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.127 0.873 26 H 0.219 0.781 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.852 -7.305 0.010 25.903 hybrid contribution 0.001 0.029 -0.021 0.035 sum -24.851 -7.277 -0.011 25.895 Atomic orbital electron populations 1.23441 0.74698 1.04494 1.03103 1.86608 1.24343 1.31156 1.83541 1.19307 0.85481 0.82250 0.73200 1.90902 1.65008 1.35942 1.44717 1.22194 0.93465 0.90461 1.11993 1.22807 0.88631 1.01201 0.98948 1.23139 0.95064 0.83241 1.09725 1.18935 0.82756 0.84896 0.74408 1.90959 1.87143 1.12880 1.45181 1.86642 1.14373 1.42714 1.81922 1.23661 0.79826 0.93019 1.02518 1.19669 0.90343 0.96486 0.98297 1.20794 0.88462 0.94696 1.52817 0.90541 1.24926 0.95599 0.98390 0.94017 1.69885 0.98177 1.35447 1.49789 0.86759 0.78001 0.85691 0.78817 1.20002 1.21167 1.18629 1.85139 1.21575 1.21238 1.63681 1.74300 0.89525 1.22958 1.10602 0.91285 0.91278 0.87321 0.78129 0.90898 0.90878 0.95064 0.95490 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.34 -3.31 10.57 -40.37 -0.43 -3.73 16 3 C 0.56 6.14 7.99 34.84 0.28 6.41 16 4 O -0.48 -5.89 16.73 -19.19 -0.32 -6.22 16 5 C -0.03 -0.30 7.22 -82.61 -0.60 -0.90 16 6 C -0.09 -1.02 10.77 -38.61 -0.42 -1.44 16 7 C -0.05 -0.60 7.36 -36.41 -0.27 -0.86 16 8 C 0.55 8.26 7.96 34.44 0.27 8.53 16 9 O -0.47 -7.94 16.70 -19.27 -0.32 -8.26 16 10 O -0.34 -5.83 10.23 -41.51 -0.42 -6.25 16 11 C 0.08 1.58 5.42 37.16 0.20 1.78 16 12 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 13 C -0.53 -14.42 9.66 -34.44 -0.33 -14.75 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 17 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 21 O 0.18 2.18 11.21 15.53 0.17 2.35 16 22 N -0.28 -3.47 12.09 33.36 0.40 -3.07 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 30 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -30.88 296.36 -3.25 -34.12 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -2.89 Total: -5.32 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.01 Total: 1.65 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 1.18 Total: -28.93 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.32 Total: -22.11 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.88 -3.25 -34.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781276482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.157 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds