Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34655 * 116.99756 * 2 1 4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.48229 * 119.99646 * 179.97438 * 3 2 1 6 6 C 1.42162 * 126.84185 * 179.71041 * 5 3 2 7 7 C 1.36751 * 103.78634 * 179.91242 * 6 5 3 8 8 C 1.47365 * 126.83958 * 180.10733 * 7 6 5 9 9 O 1.21506 * 119.99415 * 0.25704 * 8 7 6 10 10 O 1.34782 * 120.00096 * 180.26048 * 8 7 6 11 11 C 1.45201 * 116.99566 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46457 * 179.97438 * 11 10 8 13 13 C 1.50707 * 109.46750 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99700 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99878 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00337 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99992 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47454 * 89.99717 * 17 15 13 19 19 H 1.48502 * 109.47122 * 209.99844 * 17 15 13 20 20 H 1.48502 * 109.47325 * 329.99668 * 17 15 13 21 21 O 1.34648 * 106.32429 * 0.34728 * 7 6 5 22 22 N 1.20871 * 111.75100 * 359.76119 * 21 7 6 23 23 H 1.08996 * 109.47465 * 300.00024 * 1 2 3 24 24 H 1.08999 * 109.47008 * 60.00033 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.07999 * 128.10796 * 0.03447 * 6 5 3 27 27 H 1.08997 * 109.47277 * 299.99205 * 11 10 8 28 28 H 1.08998 * 109.47094 * 60.00248 * 11 10 8 29 29 H 1.09000 * 109.47336 * 299.99552 * 12 11 10 30 30 H 1.08990 * 109.47317 * 60.00136 * 12 11 10 31 31 H 0.96997 * 120.00871 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4020 2.2179 -0.0005 5 6 3.5435 1.2774 0.0006 6 6 4.3352 2.4581 -0.0051 7 6 5.6198 1.9891 0.0002 8 6 6.8542 2.7940 -0.0001 9 8 6.7883 4.0072 -0.0008 10 8 8.0563 2.1843 0.0004 11 6 9.2293 3.0400 0.0006 12 6 10.4914 2.1750 0.0017 13 6 11.7090 3.0631 0.0026 14 1 11.5941 4.1369 0.0020 15 6 12.9696 2.5046 0.0042 16 7 14.0321 3.2795 0.0045 17 14 13.1682 0.6472 0.0061 18 1 13.2221 0.1537 -1.3935 19 1 14.4259 0.2846 0.7075 20 1 12.0147 0.0267 0.7057 21 8 5.5322 0.6455 0.0004 22 7 4.3827 0.2716 0.0007 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 4.0006 3.4849 -0.0102 27 1 9.2204 3.6690 -0.8895 28 1 9.2198 3.6693 0.8905 29 1 10.5002 1.5462 0.8921 30 1 10.5012 1.5454 -0.8879 31 1 14.9190 2.8867 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781276482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = -119.609174 kcal Electronic energy + Delta-G solvation = -19196.335587 eV Core-core repulsion = 15639.634502 eV Total energy + Delta-G solvation = -3556.701085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.61700 -41.63630 -41.53786 -38.04478 -37.85380 -35.60954 -35.36927 -33.78220 -32.67114 -29.21415 -27.72893 -26.31317 -25.54902 -23.85509 -22.62510 -21.87916 -20.26805 -19.42518 -19.04976 -18.75031 -18.02850 -17.82581 -17.69114 -17.47494 -16.98854 -16.25491 -15.26265 -15.22740 -14.99633 -14.87787 -14.54254 -14.43525 -13.48236 -13.38309 -13.19465 -13.10515 -12.56524 -12.52056 -12.26624 -12.09485 -12.00112 -11.97399 -11.79590 -11.52723 -11.46786 -11.29568 -10.77526 -8.30799 -6.38600 -0.83903 -0.32207 0.82923 1.01310 1.28276 1.42381 1.43921 1.45960 1.56026 1.77625 2.37686 2.44858 3.04776 3.17266 3.41335 3.51211 3.75904 4.15768 4.18886 4.21787 4.28509 4.39406 4.65371 4.66328 4.91221 4.93110 5.32075 5.33651 5.54303 6.08798 6.18672 6.27810 6.48997 6.68419 7.26595 8.84865 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.047799 B = 0.003118 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.649766 B = 8977.281687 C = 9537.182221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.560 3.440 4 O -0.496 6.496 5 C -0.027 4.027 6 C -0.072 4.072 7 C -0.055 4.055 8 C 0.559 3.441 9 O -0.492 6.492 10 O -0.343 6.343 11 C 0.092 3.908 12 C -0.008 4.008 13 C -0.539 4.539 14 H 0.040 0.960 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.242 1.242 21 O 0.173 5.827 22 N -0.287 5.287 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.221 0.779 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.502 -8.517 -0.003 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.402 3.598 4 O -0.382 6.382 5 C -0.182 4.182 6 C -0.093 4.093 7 C -0.119 4.119 8 C 0.400 3.600 9 O -0.380 6.380 10 O -0.259 6.259 11 C 0.020 3.980 12 C -0.046 4.046 13 C -0.577 4.577 14 H 0.059 0.941 15 C -0.186 4.186 16 N -0.584 5.584 17 Si 0.773 3.227 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.165 1.165 21 O 0.081 5.919 22 N 0.022 4.978 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.155 0.845 26 H 0.237 0.763 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.857 -9.168 0.000 28.378 hybrid contribution 0.469 0.646 -0.019 0.799 sum -26.388 -8.521 -0.020 27.730 Atomic orbital electron populations 1.23804 0.72503 1.06598 1.03594 1.86601 1.26506 1.30332 1.82996 1.19233 0.85219 0.82504 0.72885 1.90897 1.65227 1.36483 1.45632 1.22354 0.93890 0.90362 1.11587 1.23048 0.87715 1.01933 0.96615 1.22657 0.94189 0.83350 1.11660 1.19060 0.82595 0.84884 0.73423 1.90958 1.87310 1.13748 1.46025 1.86596 1.14578 1.42207 1.82489 1.23234 0.79921 0.92357 1.02538 1.19517 0.90034 0.96155 0.98851 1.21102 0.90614 0.93871 1.52086 0.94147 1.25911 0.95170 1.03917 0.93611 1.70033 0.98901 1.37942 1.51544 0.85658 0.78539 0.79061 0.79454 1.18954 1.21019 1.16496 1.85142 1.21710 1.21098 1.63992 1.74297 0.89569 1.23257 1.10655 0.90817 0.90808 0.84487 0.76259 0.90976 0.90996 0.94396 0.94504 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -6.07 10.57 -55.63 -0.59 -6.66 16 3 C 0.56 11.32 7.99 70.48 0.56 11.88 16 4 O -0.50 -11.28 16.73 20.15 0.34 -10.95 16 5 C -0.03 -0.57 7.22 42.90 0.31 -0.26 16 6 C -0.07 -1.40 10.77 22.90 0.25 -1.16 16 7 C -0.06 -1.27 7.36 24.33 0.18 -1.09 16 8 C 0.56 16.02 7.96 70.22 0.56 16.58 16 9 O -0.49 -15.95 16.70 19.81 0.33 -15.62 16 10 O -0.34 -11.24 10.23 -56.17 -0.57 -11.81 16 11 C 0.09 3.50 5.42 71.98 0.39 3.89 16 12 C -0.01 -0.36 4.42 29.85 0.13 -0.23 16 13 C -0.54 -29.70 9.66 25.60 0.25 -29.46 16 14 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 15 C 0.01 0.67 5.47 84.65 0.46 1.14 16 16 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 17 Si 0.95 42.19 27.47 68.60 1.88 44.08 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 21 O 0.17 3.99 11.21 65.78 0.74 4.73 16 22 N -0.29 -6.51 12.09 -48.98 -0.59 -7.10 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.04 1.63 7.20 -2.39 -0.02 1.62 16 30 H 0.04 1.56 7.57 -2.39 -0.02 1.55 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -66.05 296.36 7.24 -58.81 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.11 Total: -1.11 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.29 Total: 2.75 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.29 Total: -64.21 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: 0.24 Total: -40.31 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Total: -66.05 7.24 -58.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781276482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.800 kcal (2) G-P(sol) polarization free energy of solvation -66.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds