Wall clock time and date at job start Mon Mar 30 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34643 * 117.00209 * 2 1 4 4 O 1.21413 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.48236 * 120.00128 * 179.97438 * 3 2 1 6 6 C 1.42167 * 126.84176 * 179.71107 * 5 3 2 7 7 C 1.36748 * 103.77862 * 179.85972 * 6 5 3 8 8 C 1.47370 * 126.83134 * 180.12732 * 7 6 5 9 9 O 1.21500 * 119.99932 * 0.30654 * 8 7 6 10 10 O 1.34781 * 120.00036 * 180.30609 * 8 7 6 11 11 C 1.45200 * 117.00303 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46596 * 29.99798 * 11 10 8 13 13 C 1.52995 * 109.46846 * 269.99632 * 11 10 8 14 14 C 1.50698 * 109.47127 * 149.99753 * 11 10 8 15 15 H 1.08003 * 120.00567 * 359.97438 * 14 11 10 16 16 C 1.37882 * 119.99792 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99994 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99823 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47314 * 60.00223 * 18 16 14 20 20 H 1.48507 * 109.46831 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47256 * 299.99780 * 18 16 14 22 22 O 1.34642 * 106.33070 * 0.39956 * 7 6 5 23 23 N 1.20868 * 111.75014 * 359.72856 * 22 7 6 24 24 H 1.08999 * 109.46863 * 299.99753 * 1 2 3 25 25 H 1.08999 * 109.46772 * 59.99942 * 1 2 3 26 26 H 1.09002 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.07996 * 128.10582 * 359.96904 * 6 5 3 28 28 H 1.09001 * 109.47496 * 59.99895 * 13 11 10 29 29 H 1.09007 * 109.47165 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.47535 * 300.00048 * 13 11 10 31 31 H 0.96999 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4021 2.2179 0.0005 5 6 3.5436 1.2772 0.0006 6 6 4.3354 2.4580 -0.0051 7 6 5.6199 1.9889 0.0015 8 6 6.8544 2.7938 0.0021 9 8 6.7885 4.0070 0.0020 10 8 8.0564 2.1841 0.0028 11 6 9.2295 3.0397 0.0040 12 1 8.9982 3.9726 0.5179 13 6 9.6427 3.3406 -1.4381 14 6 10.3599 2.3413 0.7150 15 1 10.2114 1.3534 1.1254 16 6 11.5838 2.9636 0.8416 17 7 11.7645 4.1667 0.3423 18 14 12.9851 2.0976 1.7224 19 1 13.2997 0.8265 1.0220 20 1 14.1849 2.9727 1.7236 21 1 12.5847 1.8054 3.1222 22 8 5.5322 0.6453 0.0011 23 7 4.3828 0.2715 0.0006 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0007 3.4848 -0.0111 28 1 8.8251 3.8457 -1.9525 29 1 10.5231 3.9833 -1.4373 30 1 9.8739 2.4076 -1.9521 31 1 12.6256 4.6043 0.4311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781453597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:04 Heat of formation + Delta-G solvation = -99.772694 kcal Electronic energy + Delta-G solvation = -19691.241601 eV Core-core repulsion = 16135.400690 eV Total energy + Delta-G solvation = -3555.840910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.40277 -40.69100 -39.70208 -36.95746 -36.14025 -34.40475 -33.41370 -32.38547 -29.69908 -28.49121 -25.47413 -25.31950 -24.74287 -22.73428 -21.34237 -20.26884 -18.65826 -18.18882 -17.76114 -16.87057 -16.75595 -16.68713 -16.33234 -15.42907 -15.17545 -14.63289 -14.16155 -13.93304 -13.75241 -13.17217 -12.62182 -12.47712 -12.23032 -11.97664 -11.37735 -11.28505 -11.25325 -11.16072 -10.94822 -10.93987 -10.52694 -10.43163 -10.24759 -10.05875 -9.74782 -9.05793 -8.57449 -6.26236 -4.33898 0.43703 0.83294 1.94864 2.32498 2.44475 2.97628 3.23884 3.25616 3.28337 3.36920 3.55665 4.25309 4.36541 4.63801 4.69475 4.75715 4.79650 5.07307 5.13268 5.33755 5.50719 5.77108 6.43359 6.73171 6.77404 6.88313 7.11732 7.39389 7.55254 7.59358 7.75219 7.99787 8.27751 8.73741 9.31744 10.81161 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.046728 B = 0.003546 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.070325 B = 7893.848227 C = 8249.900929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.558 3.442 4 O -0.483 6.483 5 C -0.028 4.028 6 C -0.104 4.104 7 C -0.038 4.038 8 C 0.542 3.458 9 O -0.480 6.480 10 O -0.335 6.335 11 C 0.216 3.784 12 H 0.053 0.947 13 C -0.158 4.158 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.915 3.085 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 O 0.174 5.826 23 N -0.289 5.289 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.199 0.801 28 H 0.018 0.982 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.868 -6.302 -1.322 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.399 3.601 4 O -0.368 6.368 5 C -0.183 4.183 6 C -0.126 4.126 7 C -0.102 4.102 8 C 0.382 3.618 9 O -0.369 6.369 10 O -0.250 6.250 11 C 0.164 3.836 12 H 0.070 0.930 13 C -0.216 4.216 14 C -0.563 4.563 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.199 1.199 22 O 0.083 5.917 23 N 0.019 4.981 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.217 0.783 28 H 0.037 0.963 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.223 -6.801 -1.344 18.566 hybrid contribution 0.448 0.558 0.383 0.812 sum -16.775 -6.242 -0.961 17.924 Atomic orbital electron populations 1.23420 0.74907 1.04368 1.03034 1.86609 1.24183 1.31285 1.83618 1.19340 0.85559 0.82148 0.73068 1.90894 1.65076 1.35945 1.44851 1.22162 0.93270 0.90644 1.12179 1.22775 0.88770 1.01039 1.00022 1.23445 0.95545 0.82949 1.08252 1.19006 0.83331 0.84888 0.74574 1.90910 1.87125 1.13000 1.45885 1.86665 1.14210 1.43571 1.80567 1.20893 0.77178 0.90218 0.95290 0.92975 1.22211 1.02064 1.01144 0.96147 1.20971 0.94560 1.03911 1.36866 0.90975 1.24882 0.98488 0.94991 0.95469 1.69877 1.24994 1.13220 1.44508 0.86276 0.80291 0.79254 0.80012 1.19817 1.21013 1.19891 1.85124 1.21398 1.21524 1.63649 1.74273 0.89630 1.23076 1.11090 0.91344 0.91360 0.87421 0.78343 0.96259 0.87854 0.94009 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.34 -3.80 10.57 -40.34 -0.43 -4.23 16 3 C 0.56 7.11 7.99 34.84 0.28 7.39 16 4 O -0.48 -6.71 16.74 -19.20 -0.32 -7.03 16 5 C -0.03 -0.38 7.22 -82.61 -0.60 -0.97 16 6 C -0.10 -1.42 10.77 -38.61 -0.42 -1.83 16 7 C -0.04 -0.60 7.36 -36.41 -0.27 -0.87 16 8 C 0.54 10.58 7.93 34.45 0.27 10.85 16 9 O -0.48 -10.27 16.17 -19.26 -0.31 -10.58 16 10 O -0.34 -7.50 9.88 -41.51 -0.41 -7.91 16 11 C 0.22 5.47 2.56 -27.89 -0.07 5.40 16 12 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 13 C -0.16 -3.77 9.33 37.15 0.35 -3.43 16 14 C -0.53 -14.11 8.90 -34.44 -0.31 -14.42 16 15 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.26 11.32 55.43 0.63 -23.64 16 18 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 O 0.17 2.64 11.21 15.55 0.17 2.82 16 23 N -0.29 -4.19 12.09 33.36 0.40 -3.79 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.20 2.34 8.06 -52.49 -0.42 1.91 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 2.65 6.07 -51.92 -0.32 2.33 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -29.22 294.87 -3.40 -32.61 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -2.77 Total: -3.15 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.21 Total: 5.04 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 1.03 Total: -27.42 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.29 Total: -26.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.22 -3.40 -32.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781453597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.161 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds