Wall clock time and date at job start Mon Mar 30 2020 01:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34643 * 117.00209 * 2 1 4 4 O 1.21413 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.48236 * 120.00128 * 179.97438 * 3 2 1 6 6 C 1.42167 * 126.84176 * 179.71107 * 5 3 2 7 7 C 1.36748 * 103.77862 * 179.85972 * 6 5 3 8 8 C 1.47370 * 126.83134 * 180.12732 * 7 6 5 9 9 O 1.21500 * 119.99932 * 0.30654 * 8 7 6 10 10 O 1.34781 * 120.00036 * 180.30609 * 8 7 6 11 11 C 1.45200 * 117.00303 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46596 * 29.99798 * 11 10 8 13 13 C 1.52995 * 109.46846 * 269.99632 * 11 10 8 14 14 C 1.50698 * 109.47127 * 149.99753 * 11 10 8 15 15 H 1.08003 * 120.00567 * 359.97438 * 14 11 10 16 16 C 1.37882 * 119.99792 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99994 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99823 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47314 * 60.00223 * 18 16 14 20 20 H 1.48507 * 109.46831 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47256 * 299.99780 * 18 16 14 22 22 O 1.34642 * 106.33070 * 0.39956 * 7 6 5 23 23 N 1.20868 * 111.75014 * 359.72856 * 22 7 6 24 24 H 1.08999 * 109.46863 * 299.99753 * 1 2 3 25 25 H 1.08999 * 109.46772 * 59.99942 * 1 2 3 26 26 H 1.09002 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.07996 * 128.10582 * 359.96904 * 6 5 3 28 28 H 1.09001 * 109.47496 * 59.99895 * 13 11 10 29 29 H 1.09007 * 109.47165 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.47535 * 300.00048 * 13 11 10 31 31 H 0.96999 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4021 2.2179 0.0005 5 6 3.5436 1.2772 0.0006 6 6 4.3354 2.4580 -0.0051 7 6 5.6199 1.9889 0.0015 8 6 6.8544 2.7938 0.0021 9 8 6.7885 4.0070 0.0020 10 8 8.0564 2.1841 0.0028 11 6 9.2295 3.0397 0.0040 12 1 8.9982 3.9726 0.5179 13 6 9.6427 3.3406 -1.4381 14 6 10.3599 2.3413 0.7150 15 1 10.2114 1.3534 1.1254 16 6 11.5838 2.9636 0.8416 17 7 11.7645 4.1667 0.3423 18 14 12.9851 2.0976 1.7224 19 1 13.2997 0.8265 1.0220 20 1 14.1849 2.9727 1.7236 21 1 12.5847 1.8054 3.1222 22 8 5.5322 0.6453 0.0011 23 7 4.3828 0.2715 0.0006 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0007 3.4848 -0.0111 28 1 8.8251 3.8457 -1.9525 29 1 10.5231 3.9833 -1.4373 30 1 9.8739 2.4076 -1.9521 31 1 12.6256 4.6043 0.4311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781453597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:03 Heat of formation + Delta-G solvation = -116.936686 kcal Electronic energy + Delta-G solvation = -19691.985887 eV Core-core repulsion = 16135.400690 eV Total energy + Delta-G solvation = -3556.585197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.57518 -41.62525 -41.38401 -37.94178 -37.81150 -35.59775 -35.34000 -33.67052 -31.63705 -29.19381 -27.44877 -26.54868 -25.99090 -23.98592 -22.93872 -21.60975 -20.14295 -19.36926 -18.75582 -18.66804 -18.04062 -17.81041 -17.57631 -16.94702 -16.85195 -16.39209 -15.24135 -14.93515 -14.85574 -14.53572 -14.34591 -14.03671 -13.38416 -13.25435 -13.10245 -13.03427 -12.79187 -12.38224 -12.26113 -12.19171 -12.08649 -11.99164 -11.98322 -11.67131 -11.28393 -11.03325 -10.58139 -8.27425 -6.43780 -0.80436 -0.29822 0.95116 1.02663 1.35096 1.46850 1.49344 1.51533 1.57668 1.92911 2.40286 2.49667 3.04187 3.21971 3.48546 3.61665 3.83358 4.19968 4.29553 4.40420 4.50306 4.66850 4.79600 4.82803 4.92972 5.04489 5.45377 5.60736 5.78999 6.00321 6.13052 6.36604 6.54096 6.73160 7.26686 8.79862 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.046728 B = 0.003546 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.070325 B = 7893.848227 C = 8249.900929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.562 3.438 4 O -0.496 6.496 5 C -0.023 4.023 6 C -0.078 4.078 7 C -0.051 4.051 8 C 0.547 3.453 9 O -0.502 6.502 10 O -0.344 6.344 11 C 0.218 3.782 12 H 0.023 0.977 13 C -0.147 4.147 14 C -0.551 4.551 15 H 0.070 0.930 16 C 0.020 3.980 17 N -0.914 5.914 18 Si 0.981 3.019 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.269 1.269 22 O 0.167 5.833 23 N -0.287 5.287 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.219 0.781 28 H 0.031 0.969 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.910 -7.405 -1.133 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.404 3.596 4 O -0.382 6.382 5 C -0.179 4.179 6 C -0.099 4.099 7 C -0.114 4.114 8 C 0.389 3.611 9 O -0.392 6.392 10 O -0.259 6.259 11 C 0.165 3.835 12 H 0.040 0.960 13 C -0.205 4.205 14 C -0.589 4.589 15 H 0.088 0.912 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.194 1.194 22 O 0.077 5.923 23 N 0.020 4.980 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.236 0.764 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.291 -7.918 -1.162 19.965 hybrid contribution 0.583 0.867 0.316 1.091 sum -17.708 -7.051 -0.845 19.079 Atomic orbital electron populations 1.23817 0.72450 1.06631 1.03612 1.86601 1.26547 1.30194 1.82986 1.19167 0.85020 0.82549 0.72875 1.90893 1.65162 1.36481 1.45641 1.22360 0.93991 0.90215 1.11303 1.23024 0.87648 1.01964 0.97253 1.22776 0.94359 0.83290 1.10971 1.19290 0.83366 0.85046 0.73444 1.90894 1.87437 1.14048 1.46813 1.86633 1.14748 1.43193 1.81338 1.20613 0.78068 0.89254 0.95542 0.95962 1.22048 1.01660 1.01150 0.95643 1.21267 0.95627 1.04158 1.37836 0.91152 1.25757 1.00771 0.95578 0.95877 1.69987 1.25727 1.14380 1.45086 0.85257 0.77067 0.78366 0.78887 1.18951 1.20355 1.19370 1.85133 1.21836 1.21107 1.64252 1.74271 0.89481 1.23276 1.10927 0.90811 0.90777 0.84396 0.76419 0.94990 0.89691 0.93325 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -6.96 10.57 -55.52 -0.59 -7.55 16 3 C 0.56 13.21 7.99 70.48 0.56 13.78 16 4 O -0.50 -12.77 16.74 20.12 0.34 -12.44 16 5 C -0.02 -0.60 7.22 42.91 0.31 -0.29 16 6 C -0.08 -1.98 10.77 22.90 0.25 -1.74 16 7 C -0.05 -1.56 7.36 24.33 0.18 -1.38 16 8 C 0.55 21.48 7.93 70.23 0.56 22.04 16 9 O -0.50 -21.70 16.17 19.84 0.32 -21.38 16 10 O -0.34 -15.62 9.88 -56.16 -0.55 -16.18 16 11 C 0.22 11.28 2.56 29.85 0.08 11.36 16 12 H 0.02 1.28 7.16 -2.39 -0.02 1.26 16 13 C -0.15 -7.13 9.33 71.98 0.67 -6.46 16 14 C -0.55 -29.99 8.90 25.60 0.23 -29.76 16 15 H 0.07 3.75 7.81 -2.91 -0.02 3.72 16 16 C 0.02 1.08 5.30 84.66 0.45 1.53 16 17 N -0.91 -50.41 11.32 21.45 0.24 -50.16 16 18 Si 0.98 41.51 29.54 68.60 2.03 43.53 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 O 0.17 4.94 11.21 65.85 0.74 5.68 16 23 N -0.29 -7.92 12.09 -48.98 -0.59 -8.51 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.22 4.66 8.06 -2.91 -0.02 4.64 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 4.44 6.07 -2.38 -0.01 4.42 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -62.11 294.87 7.58 -54.52 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.18 Total: 1.91 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 4.48 Total: 10.57 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.35 Total: -58.67 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: 0.25 Total: -51.87 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -62.11 7.58 -54.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781453597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.416 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds