Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.35610 * 126.40779 * 300.02397 * 4 2 1 6 6 H 0.96997 * 124.93612 * 359.95457 * 5 4 2 7 7 N 1.28480 * 110.13714 * 179.97438 * 5 4 2 8 8 C 1.31892 * 110.09111 * 359.97438 * 7 5 4 9 9 C 1.47487 * 126.47130 * 179.97438 * 8 7 5 10 10 O 1.21453 * 120.00143 * 179.97438 * 9 8 7 11 11 O 1.35063 * 119.99956 * 359.97438 * 9 8 7 12 12 C 1.22530 * 116.99974 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00038 * 359.97438 * 12 11 9 14 14 C 1.46578 * 119.99959 * 179.97438 * 12 11 9 15 15 N 1.29380 * 119.99847 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00094 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47385 * 90.00139 * 16 14 12 18 18 H 1.48500 * 109.47390 * 209.99997 * 16 14 12 19 19 H 1.48503 * 109.47382 * 330.00196 * 16 14 12 20 20 C 1.35323 * 126.41560 * 119.71179 * 4 2 1 21 21 N 1.48021 * 127.23023 * 0.02562 * 20 4 2 22 22 O 1.31701 * 119.99951 * 90.00282 * 21 20 4 23 23 O 1.31701 * 119.99798 * 270.00263 * 21 20 4 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.96999 * 120.00222 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7858 -0.3627 2.5178 6 1 1.2494 0.3964 2.7951 7 7 2.3663 -1.1843 3.3169 8 6 3.0157 -2.1032 2.6288 9 6 3.8047 -3.2191 3.1833 10 8 4.3572 -4.0019 2.4369 11 8 3.9129 -3.3705 4.5210 12 6 4.5818 -4.3157 4.9216 13 1 5.0524 -4.9825 4.2142 14 6 4.7434 -4.5415 6.3608 15 7 5.4494 -5.5398 6.7838 16 14 3.9302 -3.3878 7.5843 17 1 2.5712 -3.8899 7.9103 18 1 4.7455 -3.3261 8.8239 19 1 3.8272 -2.0301 6.9915 20 6 2.8090 -1.8183 1.2576 21 7 3.3342 -2.5725 0.0972 22 8 4.5018 -2.2533 -0.4218 23 8 2.6338 -3.5626 -0.4162 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 5.5566 -5.6891 7.7362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796257164.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = 46.923618 kcal Electronic energy + Delta-G solvation = -20574.032499 eV Core-core repulsion = 17056.845569 eV Total energy + Delta-G solvation = -3517.186930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.089 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.12936 -40.28673 -38.33938 -36.28876 -35.73729 -33.94901 -32.97318 -32.27657 -30.55787 -27.68101 -26.67701 -26.21241 -23.87478 -22.58887 -20.98659 -19.88289 -18.71091 -18.26287 -17.85273 -16.97653 -16.87085 -16.00803 -15.77778 -15.20329 -14.94746 -14.78528 -14.20059 -14.12169 -13.61576 -12.95314 -12.73680 -12.46167 -11.92119 -11.76674 -11.73769 -11.62028 -11.17729 -11.06829 -10.89034 -10.74495 -10.62948 -10.25591 -9.86705 -9.76301 -9.46300 -9.28735 -9.13092 -6.95306 -3.98071 0.14797 1.25908 1.30208 1.51037 2.59103 2.95570 3.01047 3.14798 3.54523 3.68648 3.88885 4.07263 4.18240 4.53201 4.53444 4.79479 4.80833 4.85165 5.07895 5.20769 5.28922 5.37987 5.50566 5.66983 5.74774 6.00686 6.27079 6.58065 7.05201 7.35436 7.55734 7.72545 8.27185 8.73911 9.79583 10.09918 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.005862 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.681816 B = 4775.212740 C = 5571.887336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.149 4.149 4 C 0.094 3.906 5 N -0.371 5.371 6 H 0.455 0.545 7 N -0.242 5.242 8 C 0.122 3.878 9 C 0.366 3.634 10 O -0.547 6.547 11 O -0.147 6.147 12 C -0.367 4.367 13 H 0.109 0.891 14 C 0.068 3.932 15 N -0.795 5.795 16 Si 0.912 3.088 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.248 1.248 20 C -0.076 4.076 21 N 0.017 4.983 22 O -0.136 6.136 23 O -0.137 6.137 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 15.270 -6.941 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.206 4.206 4 C -0.037 4.037 5 N -0.084 5.084 6 H 0.302 0.698 7 N -0.077 5.077 8 C -0.038 4.038 9 C 0.221 3.779 10 O -0.449 6.449 11 O -0.046 6.046 12 C -0.447 4.447 13 H 0.126 0.874 14 C -0.149 4.149 15 N -0.427 5.427 16 Si 0.734 3.266 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.171 1.171 20 C -0.171 4.171 21 N 0.514 4.486 22 O -0.341 6.341 23 O -0.341 6.341 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.024 15.662 -5.202 19.847 hybrid contribution -0.056 0.052 -0.254 0.265 sum -11.080 15.714 -5.456 19.987 Atomic orbital electron populations 1.21902 0.92418 1.03410 1.02916 1.20023 0.97256 0.96633 0.91826 1.21899 1.02437 0.93390 1.02915 1.20812 0.98849 0.94855 0.89215 1.43156 1.38982 1.24352 1.01947 0.69822 1.74140 1.11740 1.02377 1.19397 1.20852 0.99962 0.96298 0.86645 1.18269 0.90353 0.87810 0.81517 1.90715 1.50989 1.45349 1.57820 1.80147 1.56127 1.44374 1.23944 1.20413 1.26454 1.05342 0.92467 0.87378 1.26477 0.95651 0.96590 0.96219 1.68580 1.30487 1.25755 1.17890 0.86098 0.79683 0.82036 0.78757 1.18866 1.19847 1.17110 1.19395 1.12241 1.00024 0.85446 1.48958 1.00903 0.99518 0.99256 1.96256 1.02541 1.72301 1.63028 1.96256 1.57093 1.17416 1.63385 0.90674 0.92227 0.91371 0.88484 0.92234 0.91374 0.90670 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 2 C -0.04 -0.35 3.34 -91.77 -0.31 -0.65 16 3 C -0.15 -1.03 9.17 37.15 0.34 -0.69 16 4 C 0.09 1.27 5.75 -81.96 -0.47 0.80 16 5 N -0.37 -4.64 6.86 33.59 0.23 -4.41 16 6 H 0.45 3.35 8.96 -190.44 -1.71 1.64 16 7 N -0.24 -4.38 12.24 33.40 0.41 -3.97 16 8 C 0.12 2.69 7.16 -82.80 -0.59 2.10 16 9 C 0.37 9.93 7.84 34.50 0.27 10.20 16 10 O -0.55 -16.53 15.58 -19.21 -0.30 -16.83 16 11 O -0.15 -4.06 8.25 -1.85 -0.02 -4.07 16 12 C -0.37 -10.73 10.12 34.09 0.35 -10.39 16 13 H 0.11 3.53 6.82 -52.48 -0.36 3.17 16 14 C 0.07 1.82 5.69 -15.22 -0.09 1.73 16 15 N -0.80 -21.32 13.88 55.98 0.78 -20.54 16 16 Si 0.91 19.74 28.83 -169.99 -4.90 14.84 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.25 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.08 -1.48 6.86 -79.72 -0.55 -2.02 16 21 N 0.02 0.35 4.29 34.08 0.15 0.50 16 22 O -0.14 -2.95 19.97 -31.57 -0.63 -3.58 16 23 O -0.14 -2.95 19.97 -31.57 -0.63 -3.58 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.10 1.03 7.95 -51.93 -0.41 0.61 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.30 7.01 8.26 -40.82 -0.34 6.67 16 LS Contribution 297.14 15.07 4.48 4.48 Total: -1.00 -34.69 297.14 -5.29 -39.98 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.15 Total: -3.19 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.71 Total: 0.39 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 1.56 Total: -28.42 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.58 Total: -28.07 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.90 Total: 14.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.69 -5.29 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796257164.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.899 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds