Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.35610 * 126.40779 * 300.02397 * 4 2 1 6 6 H 0.96997 * 124.93612 * 359.95457 * 5 4 2 7 7 N 1.28480 * 110.13714 * 179.97438 * 5 4 2 8 8 C 1.31892 * 110.09111 * 359.97438 * 7 5 4 9 9 C 1.47487 * 126.47130 * 179.97438 * 8 7 5 10 10 O 1.21453 * 120.00143 * 179.97438 * 9 8 7 11 11 O 1.35063 * 119.99956 * 359.97438 * 9 8 7 12 12 C 1.22530 * 116.99974 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00038 * 359.97438 * 12 11 9 14 14 C 1.46578 * 119.99959 * 179.97438 * 12 11 9 15 15 N 1.29380 * 119.99847 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00094 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47385 * 90.00139 * 16 14 12 18 18 H 1.48500 * 109.47390 * 209.99997 * 16 14 12 19 19 H 1.48503 * 109.47382 * 330.00196 * 16 14 12 20 20 C 1.35323 * 126.41560 * 119.71179 * 4 2 1 21 21 N 1.48021 * 127.23023 * 0.02562 * 20 4 2 22 22 O 1.31701 * 119.99951 * 90.00282 * 21 20 4 23 23 O 1.31701 * 119.99798 * 270.00263 * 21 20 4 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.96999 * 120.00222 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7858 -0.3627 2.5178 6 1 1.2494 0.3964 2.7951 7 7 2.3663 -1.1843 3.3169 8 6 3.0157 -2.1032 2.6288 9 6 3.8047 -3.2191 3.1833 10 8 4.3572 -4.0019 2.4369 11 8 3.9129 -3.3705 4.5210 12 6 4.5818 -4.3157 4.9216 13 1 5.0524 -4.9825 4.2142 14 6 4.7434 -4.5415 6.3608 15 7 5.4494 -5.5398 6.7838 16 14 3.9302 -3.3878 7.5843 17 1 2.5712 -3.8899 7.9103 18 1 4.7455 -3.3261 8.8239 19 1 3.8272 -2.0301 6.9915 20 6 2.8090 -1.8183 1.2576 21 7 3.3342 -2.5725 0.0972 22 8 4.5018 -2.2533 -0.4218 23 8 2.6338 -3.5626 -0.4162 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 5.5566 -5.6891 7.7362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796257164.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = 21.866187 kcal Electronic energy + Delta-G solvation = -20575.119071 eV Core-core repulsion = 17056.845569 eV Total energy + Delta-G solvation = -3518.273502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.58010 -42.36771 -40.01473 -38.04920 -37.05023 -35.66580 -35.03064 -33.83482 -31.90397 -28.53544 -28.18863 -27.94208 -25.51891 -23.83592 -22.43557 -21.65903 -20.83252 -19.69485 -19.54079 -18.71734 -18.31597 -17.66283 -17.13176 -16.99994 -16.79027 -16.20510 -15.86817 -15.20370 -14.83516 -14.37271 -14.26999 -13.70018 -13.14991 -13.01641 -12.79582 -12.66523 -12.65858 -12.47131 -12.41436 -12.36165 -12.06937 -11.99927 -11.89722 -11.53040 -11.30338 -11.10476 -10.84173 -8.95588 -6.21537 -1.57989 -0.24562 -0.24149 0.00218 1.23292 1.24645 1.31736 1.46625 1.73207 1.88383 2.14295 2.70956 2.87331 2.95282 3.16111 3.54224 3.89693 3.90260 4.15171 4.19841 4.54046 4.66775 4.77070 4.82333 4.94529 5.17925 5.24747 5.26502 5.31493 5.42969 5.55237 6.10821 6.20251 6.55976 7.66638 8.13010 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.005862 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.681816 B = 4775.212740 C = 5571.887336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.147 4.147 4 C 0.140 3.860 5 N -0.330 5.330 6 H 0.484 0.516 7 N -0.223 5.223 8 C 0.084 3.916 9 C 0.369 3.631 10 O -0.589 6.589 11 O -0.144 6.144 12 C -0.429 4.429 13 H 0.049 0.951 14 C 0.034 3.966 15 N -0.833 5.833 16 Si 0.988 3.012 17 H -0.249 1.249 18 H -0.244 1.244 19 H -0.249 1.249 20 C -0.111 4.111 21 N 0.017 4.983 22 O -0.150 6.150 23 O -0.150 6.150 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 19.455 -6.254 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 C -0.205 4.205 4 C 0.008 3.992 5 N -0.049 5.049 6 H 0.338 0.662 7 N -0.059 5.059 8 C -0.076 4.076 9 C 0.224 3.776 10 O -0.492 6.492 11 O -0.044 6.044 12 C -0.508 4.508 13 H 0.067 0.933 14 C -0.180 4.180 15 N -0.465 5.465 16 Si 0.803 3.197 17 H -0.172 1.172 18 H -0.167 1.167 19 H -0.173 1.173 20 C -0.205 4.205 21 N 0.512 4.488 22 O -0.355 6.355 23 O -0.354 6.354 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.985 19.833 -4.494 24.680 hybrid contribution 0.765 -1.107 -0.704 1.519 sum -13.220 18.726 -5.198 23.504 Atomic orbital electron populations 1.21966 0.89679 1.03228 1.05601 1.20353 0.99268 0.97603 0.88576 1.21963 1.01485 0.91426 1.05599 1.21485 0.94953 0.91988 0.90746 1.43274 1.37011 1.23552 1.01093 0.66201 1.74014 1.10300 1.01643 1.19961 1.20246 1.02447 0.96928 0.87972 1.19251 0.89018 0.88060 0.81257 1.90667 1.52360 1.47268 1.58931 1.80165 1.56472 1.43915 1.23814 1.20047 1.30486 1.06929 0.93315 0.93301 1.27512 0.95490 0.98203 0.96792 1.68602 1.31172 1.27187 1.19564 0.85078 0.79401 0.78860 0.76325 1.17234 1.16701 1.17273 1.19708 1.14848 1.02182 0.83794 1.49170 1.00619 0.99333 0.99643 1.96239 1.02965 1.72459 1.63809 1.96237 1.57099 1.17940 1.64133 0.88124 0.89596 0.93007 0.89846 0.89609 0.93011 0.88117 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.18 71.98 0.66 -0.64 16 2 C -0.04 -0.56 3.34 -11.54 -0.04 -0.59 16 3 C -0.15 -1.30 9.17 71.98 0.66 -0.64 16 4 C 0.14 3.38 5.75 41.30 0.24 3.62 16 5 N -0.33 -6.85 6.86 -47.64 -0.33 -7.18 16 6 H 0.48 4.12 8.96 -219.99 -1.97 2.15 16 7 N -0.22 -7.56 12.24 -48.26 -0.59 -8.15 16 8 C 0.08 3.70 7.16 42.40 0.30 4.00 16 9 C 0.37 21.08 7.84 70.26 0.55 21.63 16 10 O -0.59 -38.27 15.58 19.97 0.31 -37.96 16 11 O -0.14 -8.37 8.25 82.07 0.68 -7.69 16 12 C -0.43 -26.96 10.12 70.00 0.71 -26.26 16 13 H 0.05 3.56 6.82 -2.91 -0.02 3.54 16 14 C 0.03 1.90 5.69 87.23 0.50 2.39 16 15 N -0.83 -46.31 13.88 23.21 0.32 -45.99 16 16 Si 0.99 40.17 28.83 68.60 1.98 42.15 16 17 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 18 H -0.24 -8.70 7.11 99.48 0.71 -7.99 16 19 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 20 C -0.11 -4.24 6.86 36.52 0.25 -3.99 16 21 N 0.02 0.72 4.29 -46.11 -0.20 0.52 16 22 O -0.15 -6.71 19.97 3.51 0.07 -6.64 16 23 O -0.15 -6.66 19.97 3.51 0.07 -6.59 16 24 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.08 1.55 7.95 -2.39 -0.02 1.54 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.31 14.96 8.26 -92.71 -0.77 14.19 16 Total: -1.00 -85.29 297.14 5.37 -79.92 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -0.77 Total: -1.91 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 3.83 Total: -0.47 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.79 Total: -60.80 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: 1.13 Total: -58.89 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.98 Total: 42.15 kcal Total: -85.29 5.37 -79.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796257164.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.788 kcal (2) G-P(sol) polarization free energy of solvation -85.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds