Wall clock time and date at job start Mon Mar 30 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48493 * 109.46720 * 29.99666 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46630 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46977 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47274 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99958 * 359.97438 * 13 12 11 15 15 O 1.34234 * 120.00068 * 180.02562 * 13 12 11 16 16 C 1.45196 * 116.99938 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47016 * 179.97438 * 16 15 13 18 18 C 1.33634 * 126.04048 * 89.72027 * 17 16 15 19 19 N 1.31776 * 114.50368 * 179.78998 * 18 17 16 20 20 C 1.29027 * 117.12421 * 0.51642 * 19 18 17 21 21 S 1.70984 * 110.16468 * 359.71534 * 20 19 18 22 22 H 0.97000 * 119.99712 * 0.02562 * 1 2 3 23 23 H 1.08988 * 109.47520 * 59.99841 * 9 7 2 24 24 H 1.08997 * 109.47026 * 299.98967 * 9 7 2 25 25 H 1.08999 * 109.47785 * 59.99993 * 10 9 7 26 26 H 1.09000 * 109.46944 * 299.99068 * 10 9 7 27 27 H 1.09004 * 109.47166 * 59.99234 * 11 10 9 28 28 H 1.09005 * 109.46988 * 299.99622 * 11 10 9 29 29 H 1.09004 * 109.47330 * 59.99726 * 12 11 10 30 30 H 1.08997 * 109.47279 * 300.00213 * 12 11 10 31 31 H 1.08996 * 109.47465 * 299.99911 * 16 15 13 32 32 H 1.08999 * 109.47008 * 59.99921 * 16 15 13 33 33 H 1.08003 * 122.74575 * 359.96910 * 18 17 16 34 34 H 1.07996 * 124.91793 * 179.68263 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0044 14 8 0.5128 -7.4551 0.0052 15 8 2.3922 -8.6176 0.0056 16 6 1.6014 -9.8353 0.0074 17 6 2.5194 -11.0305 0.0080 18 6 3.0033 -11.6497 1.0888 19 7 3.7851 -12.6773 0.8258 20 6 3.9960 -12.9532 -0.4168 21 16 3.1504 -11.8535 -1.4164 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8714 -3.6040 0.8922 26 1 2.8726 -3.6047 -0.8878 27 1 0.8539 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8923 29 1 3.1012 -6.0918 0.8931 30 1 3.1012 -6.0927 -0.8868 31 1 0.9729 -9.8591 0.8976 32 1 0.9723 -9.8613 -0.8824 33 1 2.7702 -11.3355 2.0955 34 1 4.6171 -13.7613 -0.7739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805910570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:49 Heat of formation + Delta-G solvation = -63.127275 kcal Electronic energy + Delta-G solvation = -16863.503945 eV Core-core repulsion = 13887.838065 eV Total energy + Delta-G solvation = -2975.665880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63056 -39.94507 -36.86989 -35.00885 -32.76144 -32.26812 -29.95136 -27.58504 -25.88868 -24.51608 -22.71791 -20.64692 -20.58952 -20.05391 -18.67064 -17.63157 -16.88596 -16.46973 -16.17715 -15.54419 -14.82971 -14.74436 -14.44237 -14.37236 -13.72546 -13.39352 -12.88406 -12.55084 -12.36103 -11.86540 -11.75592 -11.68613 -11.02462 -10.90743 -10.63729 -10.61104 -10.50027 -10.47410 -10.09710 -9.80876 -9.66860 -9.45359 -9.29272 -9.03302 -8.32696 -5.97524 -4.00091 0.12438 0.86240 1.27474 2.20191 2.24475 2.78745 3.33110 3.39302 3.42517 3.87332 4.30416 4.47493 4.54376 4.73946 4.80068 5.02848 5.21038 5.23282 5.25388 5.38070 5.65502 5.68411 6.02919 6.15419 6.27890 6.44452 6.74367 6.92351 7.14373 7.20908 7.70616 7.71869 7.85511 8.03169 8.44912 9.07461 9.63783 11.13796 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.057777 B = 0.002410 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.509549 B =11614.610789 C =11765.849183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.462 3.538 14 O -0.503 6.503 15 O -0.358 6.358 16 C 0.145 3.855 17 C -0.233 4.233 18 C 0.063 3.937 19 N -0.474 5.474 20 C 0.023 3.977 21 S 0.149 5.851 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 -26.169 -1.940 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.305 3.695 14 O -0.389 6.389 15 O -0.276 6.276 16 C 0.069 3.931 17 C -0.355 4.355 18 C -0.090 4.090 19 N -0.187 5.187 20 C -0.274 4.274 21 S 0.402 5.598 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.568 -26.343 -2.619 27.275 hybrid contribution 0.174 1.023 0.831 1.330 sum 6.742 -25.320 -1.788 26.263 Atomic orbital electron populations 1.69971 1.06061 1.26559 1.50878 1.25046 0.94850 0.99275 0.95414 0.86598 0.79828 0.83526 0.78067 1.20693 1.21253 1.19895 1.21271 0.93014 0.91134 1.50498 0.92691 1.19096 0.94027 0.91233 0.97366 1.21653 0.99156 0.93513 1.00442 1.21591 0.97079 0.92672 1.03285 1.21635 0.99972 0.87616 1.05629 1.24282 0.87664 0.85648 0.71919 1.90685 1.15612 1.87727 1.44916 1.86614 1.41859 1.14487 1.84600 1.20967 0.89914 0.78031 1.04217 1.25621 1.09559 1.04399 0.95886 1.21899 0.94860 0.91882 1.00374 1.66397 1.16227 1.16823 1.19287 1.28538 1.03470 1.04012 0.91405 1.84167 1.41122 1.23604 1.10885 0.93018 0.96544 0.96535 0.93174 0.93184 0.91506 0.91479 0.87757 0.87786 0.88787 0.89755 0.80310 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -1.43 5.81 -27.89 -0.16 -1.59 16 13 C 0.46 6.29 7.96 36.01 0.29 6.58 16 14 O -0.50 -8.28 15.73 -18.75 -0.29 -8.58 16 15 O -0.36 -4.26 10.20 -39.27 -0.40 -4.66 16 16 C 0.14 1.41 5.99 36.01 0.22 1.63 16 17 C -0.23 -2.09 6.24 -35.92 -0.22 -2.31 16 18 C 0.06 0.56 11.25 -19.19 -0.22 0.35 16 19 N -0.47 -4.51 10.54 -15.75 -0.17 -4.67 16 20 C 0.02 0.16 12.23 51.58 0.63 0.79 16 21 S 0.15 1.06 23.22 -107.50 -2.50 -1.43 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.45 8.14 -51.94 -0.42 0.03 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 28 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.20 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -33.41 316.01 -7.77 -41.18 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.61 Total: -4.69 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.28 Total: -12.10 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.57 Total: -31.21 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.70 Total: -13.23 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.50 Total: -1.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.41 -7.77 -41.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805910570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.952 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds