Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99712 * 2 1 4 4 O 1.21271 * 119.99949 * 185.07553 * 3 2 1 5 5 C 1.50707 * 120.00063 * 5.07698 * 3 2 1 6 6 C 1.52995 * 109.46898 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46898 * 179.97438 * 6 5 3 8 8 H 1.07997 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99537 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00270 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99357 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47252 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47264 * 120.00050 * 11 9 7 14 14 H 1.48504 * 109.46722 * 239.99367 * 11 9 7 15 15 C 1.39483 * 120.00106 * 179.97438 * 2 1 3 16 16 C 1.39419 * 120.13631 * 265.03497 * 15 2 1 17 17 C 1.38575 * 117.92254 * 179.97438 * 16 15 2 18 18 C 1.38923 * 118.01833 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.01769 * 179.97438 * 18 17 16 20 20 N 1.31916 * 119.96883 * 0.02562 * 18 17 16 21 21 N 1.28354 * 122.25291 * 359.97438 * 20 18 17 22 22 H 1.09003 * 109.47548 * 269.99756 * 1 2 3 23 23 H 1.08999 * 109.47473 * 30.00595 * 1 2 3 24 24 H 1.09005 * 109.46814 * 149.99828 * 1 2 3 25 25 H 1.09000 * 109.46816 * 300.00065 * 5 3 2 26 26 H 1.08993 * 109.47157 * 59.99963 * 5 3 2 27 27 H 1.09000 * 109.47384 * 299.99648 * 6 5 3 28 28 H 1.08997 * 109.47733 * 59.99789 * 6 5 3 29 29 H 0.97003 * 119.99827 * 180.02562 * 10 9 7 30 30 H 1.07992 * 121.03654 * 0.02562 * 16 15 2 31 31 H 1.07996 * 120.99022 * 179.72879 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3480 1.1693 -0.0929 5 6 1.3897 2.4698 0.1155 6 6 2.3829 3.6333 0.0901 7 6 1.6337 4.9359 0.2050 8 1 0.5569 4.9340 0.2874 9 6 2.3230 6.1300 0.2038 10 7 3.6343 6.1322 0.1029 11 14 1.3944 7.7445 0.3469 12 1 -0.0617 7.4708 0.4475 13 1 1.8472 8.4701 1.5608 14 1 1.6596 8.5761 -0.8545 15 6 2.1624 -1.2079 0.0005 16 6 2.6028 -1.7614 1.2020 17 6 3.2907 -2.9632 1.1493 18 6 3.4994 -3.5416 -0.0965 19 17 4.3555 -5.0465 -0.2229 20 7 3.0475 -2.9462 -1.1835 21 7 2.4099 -1.8331 -1.1400 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 0.6968 2.5657 -0.7204 26 1 0.8332 2.4870 1.0525 27 1 3.0761 3.5376 0.9258 28 1 2.9391 3.6159 -0.8471 29 1 4.1192 6.9723 0.1025 30 1 2.4130 -1.2693 2.1444 31 1 3.6579 -3.4337 2.0493 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812997482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = -2.084680 kcal Electronic energy + Delta-G solvation = -17503.561499 eV Core-core repulsion = 14424.958574 eV Total energy + Delta-G solvation = -3078.602925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.56536 -40.85577 -38.09858 -37.05155 -35.62176 -34.45324 -33.41414 -32.26482 -28.05881 -27.92105 -26.00596 -25.58506 -23.48456 -20.81064 -19.25804 -18.96084 -18.55055 -18.22354 -17.53287 -16.67975 -16.46773 -16.25234 -15.55950 -14.97740 -14.71270 -14.53320 -14.22531 -13.87438 -13.50537 -13.37848 -13.16622 -12.91253 -12.83985 -12.67017 -12.42747 -11.93567 -11.63835 -11.53532 -11.30393 -11.27366 -11.06373 -10.73923 -10.56625 -10.03219 -8.16930 -6.30665 -0.61865 -0.50383 0.36075 1.38532 1.44679 1.45750 1.54124 1.59348 2.08280 2.44152 3.02178 3.16202 3.17062 3.56845 3.57198 3.79800 4.01589 4.27848 4.44368 4.47248 4.57152 4.65640 4.75098 4.83920 5.04812 5.40882 5.52372 5.61757 5.85494 6.01212 6.17183 6.86706 6.98770 7.26258 7.39947 8.96009 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.047492 B = 0.003424 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.435716 B = 8176.242892 C = 8471.400292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.571 5.571 3 C 0.523 3.477 4 O -0.575 6.575 5 C -0.108 4.108 6 C 0.040 3.960 7 C -0.538 4.538 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.939 5.939 11 Si 0.973 3.027 12 H -0.249 1.249 13 H -0.281 1.281 14 H -0.284 1.284 15 C 0.287 3.713 16 C -0.089 4.089 17 C -0.078 4.078 18 C 0.102 3.898 19 Cl 0.013 6.987 20 N -0.250 5.250 21 N -0.258 5.258 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.121 0.879 27 H -0.014 1.014 28 H -0.022 1.022 29 H 0.262 0.738 30 H 0.191 0.809 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 -21.104 5.932 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.306 5.306 3 C 0.314 3.686 4 O -0.452 6.452 5 C -0.147 4.147 6 C 0.002 3.998 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.205 4.205 10 N -0.579 5.579 11 Si 0.797 3.203 12 H -0.172 1.172 13 H -0.207 1.207 14 H -0.211 1.211 15 C 0.053 3.947 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.070 4.070 19 Cl 0.042 6.958 20 N -0.094 5.094 21 N -0.102 5.102 22 H 0.116 0.884 23 H 0.115 0.885 24 H 0.100 0.900 25 H 0.129 0.871 26 H 0.139 0.861 27 H 0.004 0.996 28 H -0.004 1.004 29 H 0.070 0.930 30 H 0.208 0.792 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.246 -21.141 4.194 22.738 hybrid contribution 0.567 0.783 1.067 1.439 sum -6.680 -20.358 5.261 22.062 Atomic orbital electron populations 1.22302 0.73958 1.05241 1.05003 1.45518 1.09126 1.01103 1.74843 1.21835 0.87617 0.85835 0.73272 1.90694 1.17219 1.87561 1.49767 1.21703 0.99259 0.88083 1.05680 1.18740 0.93790 0.92517 0.94755 1.21728 0.94509 0.91354 1.49989 0.90052 1.26137 0.95658 1.03959 0.94782 1.70188 1.08585 1.27685 1.51470 0.85280 0.79503 0.78129 0.77370 1.17230 1.20737 1.21057 1.20259 0.94029 0.89192 0.91192 1.22948 0.94172 0.94624 1.00239 1.22680 0.95186 0.93993 0.98835 1.23883 0.97254 0.92871 0.92979 1.98432 1.73208 1.25754 1.98456 1.72817 1.06726 1.02747 1.27104 1.73047 1.09289 1.01906 1.25972 0.88414 0.88465 0.89982 0.87090 0.86100 0.99563 1.00357 0.92950 0.79160 0.77300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.19 127.77 1.30 2.59 16 2 N -0.57 -16.14 2.99 -660.22 -1.97 -18.12 16 3 C 0.52 19.93 7.63 87.66 0.67 20.60 16 4 O -0.58 -28.41 15.96 -3.00 -0.05 -28.46 16 5 C -0.11 -4.03 4.31 29.85 0.13 -3.90 16 6 C 0.04 2.13 4.26 29.85 0.13 2.26 16 7 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 10 N -0.94 -58.89 13.29 21.45 0.28 -58.61 16 11 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 12 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 C 0.29 8.22 5.56 132.97 0.74 8.96 16 16 C -0.09 -1.82 10.14 22.64 0.23 -1.59 16 17 C -0.08 -1.29 9.99 22.51 0.22 -1.06 16 18 C 0.10 2.29 7.37 84.84 0.62 2.92 16 19 Cl 0.01 0.24 29.13 -2.72 -0.08 0.16 16 20 N -0.25 -7.56 11.48 -49.83 -0.57 -8.13 16 21 N -0.26 -8.55 11.53 -54.91 -0.63 -9.18 16 22 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.10 1.55 6.48 -2.39 -0.02 1.53 16 24 H 0.08 1.25 8.05 -2.38 -0.02 1.23 16 25 H 0.11 3.61 7.25 -2.39 -0.02 3.60 16 26 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 27 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 28 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -81.72 295.67 4.90 -76.82 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: 1.15 Total: -1.32 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 4.74 Total: 1.54 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -2.89 Total: -94.04 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -81.72 4.90 -76.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812997482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.737 kcal (2) G-P(sol) polarization free energy of solvation -81.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds