Wall clock time and date at job start Mon Mar 30 2020 00:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.38989 * 111.00083 * 200.95664 * 13 12 11 15 15 C 1.39303 * 120.08788 * 300.12524 * 14 13 12 16 16 N 1.31939 * 119.92913 * 180.02562 * 15 14 13 17 17 C 1.32233 * 120.10151 * 359.97438 * 16 15 14 18 18 C 1.38348 * 120.17141 * 0.02562 * 17 16 15 19 19 Cl 1.73600 * 119.96333 * 179.97438 * 18 17 16 20 20 N 1.32332 * 120.06989 * 359.67798 * 18 17 16 21 21 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 24 24 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 25 25 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 26 26 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 27 27 H 1.08993 * 110.41505 * 265.07634 * 12 11 9 28 28 H 1.08009 * 120.03537 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.91597 * 179.97438 * 17 16 15 30 30 H 1.08997 * 110.41171 * 280.70763 * 21 13 12 31 31 H 1.08994 * 110.41722 * 158.25775 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7677 -5.3111 1.7255 15 6 2.8200 -5.8480 3.0098 16 7 3.2519 -7.0815 3.1906 17 6 3.6346 -7.8087 2.1546 18 6 3.5844 -7.2797 0.8772 19 17 4.0888 -8.2389 -0.4790 20 7 3.1468 -6.0453 0.6875 21 6 2.2353 -3.6860 0.0841 22 1 -0.4850 0.8400 0.0004 23 1 -0.2182 -1.8976 -1.2518 24 1 0.5047 -1.7234 1.8966 25 1 -0.6630 -2.7500 1.0097 26 1 0.9061 -3.6937 3.0941 27 1 0.3265 -4.7355 1.7579 28 1 2.5072 -5.2551 3.8567 29 1 3.9880 -8.8179 2.3060 30 1 1.8497 -4.5373 -0.4769 31 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:48 Heat of formation + Delta-G solvation = 9.984379 kcal Electronic energy + Delta-G solvation = -18401.101949 eV Core-core repulsion = 15323.022378 eV Total energy + Delta-G solvation = -3078.079571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25865 -38.55379 -36.84109 -35.33786 -33.91499 -32.18447 -31.31035 -28.74329 -28.20432 -25.35757 -24.17476 -23.42347 -20.99137 -19.65727 -17.56561 -17.52336 -17.14958 -16.65582 -15.51241 -15.23684 -14.90159 -14.38865 -13.96247 -13.32175 -13.19734 -12.62456 -12.35107 -12.21243 -11.87598 -11.62880 -11.47713 -11.35772 -11.32454 -10.94881 -10.76592 -10.63496 -10.45695 -10.10020 -9.57390 -9.23498 -9.16671 -8.63972 -8.25600 -8.10511 -6.24816 -4.31398 0.64169 1.04299 1.60459 3.22253 3.29577 3.33902 3.45994 3.77322 4.18334 4.29512 4.38673 4.59772 5.04835 5.07874 5.20892 5.40263 5.58825 5.81815 5.91665 6.01360 6.11011 6.45023 6.62389 6.70758 6.88732 7.09445 7.31778 7.35873 7.47046 7.69248 7.76297 8.09401 8.71629 9.33347 9.43092 10.82545 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.005079 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.281504 B = 5511.133002 C = 5772.904977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.247 3.753 10 O -0.591 6.591 11 C -0.123 4.123 12 C 0.041 3.959 13 N -0.437 5.437 14 C 0.294 3.706 15 C 0.039 3.961 16 N -0.405 5.405 17 C 0.019 3.981 18 C 0.156 3.844 19 Cl -0.024 7.024 20 N -0.472 5.472 21 C 0.064 3.936 22 H 0.267 0.733 23 H 0.384 0.616 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.061 0.939 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -11.957 4.536 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.207 3.793 10 O -0.400 6.400 11 C -0.161 4.161 12 C -0.084 4.084 13 N -0.154 5.154 14 C 0.057 3.943 15 C -0.127 4.127 16 N -0.118 5.118 17 C -0.140 4.140 18 C -0.012 4.012 19 Cl 0.004 6.996 20 N -0.194 5.194 21 C -0.062 4.062 22 H 0.077 0.923 23 H 0.235 0.765 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.195 0.805 29 H 0.191 0.809 30 H 0.079 0.921 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.816 -12.046 4.591 13.444 hybrid contribution -0.156 0.978 -0.431 1.080 sum 3.660 -11.068 4.161 12.377 Atomic orbital electron populations 1.69678 1.05902 1.27534 1.50837 1.24999 0.95005 0.99481 0.93898 0.86452 0.79884 0.82597 0.78266 1.20510 1.21129 1.19757 1.21631 0.93632 0.90209 1.50711 0.91861 1.19288 0.86417 0.91510 0.82077 1.86102 1.53188 1.54363 1.46307 1.22963 0.98984 0.94840 0.99340 1.23372 0.84350 1.00054 1.00642 1.62352 1.21795 1.12532 1.18765 1.21339 0.93800 0.89545 0.89570 1.23425 1.00151 0.92494 0.96664 1.68442 1.06025 1.05370 1.31997 1.23259 1.02242 1.01732 0.86812 1.22729 0.97728 0.91365 0.89387 1.98413 1.88351 1.67492 1.45298 1.67831 1.12786 1.04656 1.34174 1.22989 1.01491 0.98326 0.83428 0.92291 0.76493 0.89826 0.91979 0.89979 0.93693 0.80484 0.80935 0.92113 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.19 10.80 55.43 0.60 -22.59 16 2 C 0.07 1.75 5.01 -17.82 -0.09 1.66 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.52 -13.70 8.10 -34.44 -0.28 -13.98 16 8 H 0.06 1.69 7.54 -52.49 -0.40 1.29 16 9 C 0.25 5.95 1.06 -90.38 -0.10 5.85 16 10 O -0.59 -14.99 12.95 -35.23 -0.46 -15.45 16 11 C -0.12 -2.64 5.55 -25.35 -0.14 -2.78 16 12 C 0.04 0.72 5.91 -2.18 -0.01 0.70 16 13 N -0.44 -8.33 5.42 -168.66 -0.91 -9.24 16 14 C 0.29 5.03 6.22 -154.74 -0.96 4.07 16 15 C 0.04 0.56 10.55 -17.11 -0.18 0.38 16 16 N -0.40 -5.61 10.49 -12.85 -0.13 -5.75 16 17 C 0.02 0.25 10.99 -17.34 -0.19 0.06 16 18 C 0.16 2.27 7.28 -17.30 -0.13 2.15 16 19 Cl -0.02 -0.30 29.13 -51.86 -1.51 -1.81 16 20 N -0.47 -8.25 8.65 -9.36 -0.08 -8.33 16 21 C 0.06 1.39 5.16 -2.18 -0.01 1.38 16 22 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 23 H 0.38 9.79 7.31 45.56 0.33 10.12 16 24 H 0.08 1.95 7.22 -51.93 -0.38 1.57 16 25 H 0.06 1.34 7.98 -51.93 -0.41 0.92 16 26 H 0.08 1.22 8.02 -51.93 -0.42 0.80 16 27 H 0.04 0.76 7.97 -51.93 -0.41 0.34 16 28 H 0.18 2.13 7.89 -52.48 -0.41 1.72 16 29 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.06 1.36 7.20 -51.93 -0.37 0.98 16 31 H 0.08 1.94 7.67 -51.93 -0.40 1.54 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -27.28 279.28 -7.82 -35.11 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.43 Total: 9.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.09 Total: -0.51 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.53 Total: -45.91 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.46 Total: -15.45 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.28 -7.82 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.092 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds