Wall clock time and date at job start Mon Mar 30 2020 00:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.38989 * 111.00083 * 200.95664 * 13 12 11 15 15 C 1.39303 * 120.08788 * 300.12524 * 14 13 12 16 16 N 1.31939 * 119.92913 * 180.02562 * 15 14 13 17 17 C 1.32233 * 120.10151 * 359.97438 * 16 15 14 18 18 C 1.38348 * 120.17141 * 0.02562 * 17 16 15 19 19 Cl 1.73600 * 119.96333 * 179.97438 * 18 17 16 20 20 N 1.32332 * 120.06989 * 359.67798 * 18 17 16 21 21 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 24 24 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 25 25 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 26 26 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 27 27 H 1.08993 * 110.41505 * 265.07634 * 12 11 9 28 28 H 1.08009 * 120.03537 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.91597 * 179.97438 * 17 16 15 30 30 H 1.08997 * 110.41171 * 280.70763 * 21 13 12 31 31 H 1.08994 * 110.41722 * 158.25775 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7677 -5.3111 1.7255 15 6 2.8200 -5.8480 3.0098 16 7 3.2519 -7.0815 3.1906 17 6 3.6346 -7.8087 2.1546 18 6 3.5844 -7.2797 0.8772 19 17 4.0888 -8.2389 -0.4790 20 7 3.1468 -6.0453 0.6875 21 6 2.2353 -3.6860 0.0841 22 1 -0.4850 0.8400 0.0004 23 1 -0.2182 -1.8976 -1.2518 24 1 0.5047 -1.7234 1.8966 25 1 -0.6630 -2.7500 1.0097 26 1 0.9061 -3.6937 3.0941 27 1 0.3265 -4.7355 1.7579 28 1 2.5072 -5.2551 3.8567 29 1 3.9880 -8.8179 2.3060 30 1 1.8497 -4.5373 -0.4769 31 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:48 Heat of formation + Delta-G solvation = -10.120817 kcal Electronic energy + Delta-G solvation = -18401.973776 eV Core-core repulsion = 15323.022378 eV Total energy + Delta-G solvation = -3078.951398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46568 -40.09470 -37.90454 -37.01300 -35.17516 -34.18205 -32.71467 -30.21301 -29.85389 -27.05944 -25.45115 -24.81065 -22.46629 -21.40814 -19.13195 -18.80695 -18.77494 -17.77939 -16.95576 -16.76134 -16.48660 -15.86398 -15.76357 -14.83817 -14.43619 -14.20529 -14.08992 -13.48594 -13.33862 -13.22199 -13.03290 -12.84207 -12.60527 -12.51556 -12.39370 -12.26634 -12.16498 -11.93745 -11.02630 -10.84606 -10.60414 -10.38629 -10.18683 -9.41688 -8.21237 -6.34535 -0.47584 -0.12183 0.53838 1.41380 1.44446 1.53424 2.25934 2.40472 2.52174 3.01793 3.11455 3.27797 3.37355 3.79298 3.92909 4.13978 4.16866 4.24489 4.35354 4.53653 4.69792 4.93201 4.96538 5.04990 5.19232 5.48444 5.63071 5.73086 5.84756 6.11033 6.17390 6.52546 6.69277 7.33564 7.42463 8.84600 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.005079 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.281504 B = 5511.133002 C = 5772.904977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.048 0.952 9 C 0.230 3.770 10 O -0.601 6.601 11 C -0.113 4.113 12 C 0.049 3.951 13 N -0.444 5.444 14 C 0.268 3.732 15 C 0.052 3.948 16 N -0.408 5.408 17 C 0.043 3.957 18 C 0.141 3.859 19 Cl -0.010 7.010 20 N -0.502 5.502 21 C 0.080 3.920 22 H 0.270 0.730 23 H 0.380 0.620 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.203 0.797 29 H 0.213 0.787 30 H 0.050 0.950 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -13.142 6.033 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.066 0.934 9 C 0.191 3.809 10 O -0.410 6.410 11 C -0.152 4.152 12 C -0.075 4.075 13 N -0.162 5.162 14 C 0.032 3.968 15 C -0.113 4.113 16 N -0.122 5.122 17 C -0.117 4.117 18 C -0.027 4.027 19 Cl 0.018 6.982 20 N -0.224 5.224 21 C -0.047 4.047 22 H 0.079 0.921 23 H 0.230 0.770 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.220 0.780 29 H 0.229 0.771 30 H 0.068 0.932 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.315 -13.251 6.104 15.214 hybrid contribution -0.267 1.202 -0.938 1.548 sum 4.048 -12.048 5.166 13.720 Atomic orbital electron populations 1.69743 1.06556 1.28206 1.50540 1.25586 0.95804 1.01893 0.93494 0.85591 0.78741 0.79423 0.78037 1.20558 1.20271 1.19934 1.21783 0.93150 0.91759 1.51765 0.93359 1.19538 0.87080 0.91744 0.82578 1.86093 1.53265 1.54128 1.47499 1.22694 0.98290 0.96061 0.98178 1.23346 0.83904 0.98265 1.02014 1.62386 1.22600 1.14734 1.16441 1.21358 0.95580 0.89174 0.90656 1.23724 0.98779 0.92693 0.96071 1.68598 1.06346 1.05122 1.32092 1.23896 0.99410 1.02769 0.85647 1.23021 0.98207 0.90741 0.90767 1.98416 1.88153 1.66757 1.44836 1.67695 1.13291 1.06120 1.35329 1.22610 0.99512 0.96896 0.85721 0.92058 0.77019 0.91869 0.92651 0.86509 0.92794 0.78046 0.77095 0.93207 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.32 10.80 21.45 0.23 -47.09 16 2 C 0.03 1.70 5.01 84.65 0.42 2.12 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.55 -29.27 8.10 25.60 0.21 -29.06 16 8 H 0.05 2.66 7.54 -2.91 -0.02 2.64 16 9 C 0.23 11.35 1.06 -10.64 -0.01 11.34 16 10 O -0.60 -31.43 12.95 -148.98 -1.93 -33.36 16 11 C -0.11 -4.91 5.55 31.49 0.17 -4.74 16 12 C 0.05 1.68 5.91 86.45 0.51 2.19 16 13 N -0.44 -16.67 5.42 -687.51 -3.72 -20.39 16 14 C 0.27 8.81 6.22 133.03 0.83 9.64 16 15 C 0.05 1.36 10.55 84.93 0.90 2.26 16 16 N -0.41 -9.94 10.49 -194.56 -2.04 -11.98 16 17 C 0.04 0.94 10.99 84.66 0.93 1.87 16 18 C 0.14 3.82 7.28 84.64 0.62 4.44 16 19 Cl -0.01 -0.23 29.13 -2.72 -0.08 -0.31 16 20 N -0.50 -17.12 8.65 -183.54 -1.59 -18.70 16 21 C 0.08 3.57 5.16 86.45 0.45 4.02 16 22 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 23 H 0.38 19.97 7.31 -74.06 -0.54 19.43 16 24 H 0.06 2.96 7.22 -2.39 -0.02 2.94 16 25 H 0.05 2.41 7.98 -2.39 -0.02 2.39 16 26 H 0.12 3.15 8.02 -2.38 -0.02 3.13 16 27 H 0.05 1.73 7.97 -2.39 -0.02 1.71 16 28 H 0.20 4.12 7.89 -2.91 -0.02 4.10 16 29 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.05 2.29 7.20 -2.39 -0.02 2.27 16 31 H 0.06 3.08 7.67 -2.39 -0.02 3.06 16 Total: -1.00 -59.08 279.28 -1.45 -60.53 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.63 Total: 23.23 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.02 Total: 4.07 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -7.12 Total: -98.17 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.93 Total: -33.36 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -59.08 -1.45 -60.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.406 kcal (2) G-P(sol) polarization free energy of solvation -59.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds